Геном прокариот/Материалы:NC 000907

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_000907            1830138 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Haemophilus influenzae Rd KW20, complete genome.
   ACCESSION   NC_000907
   VERSION     NC_000907.1  GI:16271976
   KEYWORDS    .
   SOURCE      Haemophilus influenzae Rd KW20
     ORGANISM  Haemophilus influenzae Rd KW20
               Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
               Pasteurellaceae; Haemophilus.
   REFERENCE   1  (bases 1 to 1830138)
     AUTHORS   Langen,H., Takacs,B., Evers,S., Berndt,P., Lahm,H.W., Wipf,B.,
               Gray,C. and Fountoulakis,M.
     TITLE     Two-dimensional map of the proteome of Haemophilus influenzae
     JOURNAL   Electrophoresis 21 (2), 411-429 (2000)
      PUBMED   10675023
   REFERENCE   2  (bases 1 to 1830138)
     AUTHORS   Fountoulakis,M., Juranville,J.F., Roder,D., Evers,S., Berndt,P. and
               Langen,H.
     TITLE     Reference map of the low molecular mass proteins of Haemophilus
               influenzae
     JOURNAL   Electrophoresis 19 (10), 1819-1827 (1998)
      PUBMED   9719565
   REFERENCE   3  (bases 1 to 1830138)
     AUTHORS   Tatusov,R.L., Mushegian,A.R., Bork,P., Brown,N.P., Hayes,W.S.,
               Borodovsky,M., Rudd,K.E. and Koonin,E.V.
     TITLE     Metabolism and evolution of Haemophilus influenzae deduced from a
               whole-genome comparison with Escherichia coli
     JOURNAL   Curr. Biol. 6 (3), 279-291 (1996)
      PUBMED   8805245
   REFERENCE   4  (bases 1 to 1830138)
     AUTHORS   Smith,H.O., Tomb,J.F., Dougherty,B.A., Fleischmann,R.D. and
               Venter,J.C.
     TITLE     Frequency and distribution of DNA uptake signal sequences in the
               Haemophilus influenzae Rd genome
     JOURNAL   Science 269 (5223), 538-540 (1995)
      PUBMED   7542802
   REFERENCE   5  (bases 1 to 1830138)
     AUTHORS   Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A.,
               Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F.,
               Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G.G.,
               FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R.,
               Liu,L.I., Glodek,A., Kelley,J.M., Weidman,J.F., Phillips,C.A.,
               Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T., Hanna,M.C.,
               Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L.,
               Fuhrmann,J.L., Geoghagen,N.S., Gnehm,C.L., McDonald,L.A.,
               Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C.
     TITLE     Whole-genome random sequencing and assembly of Haemophilus
               influenzae Rd
     JOURNAL   Science 269 (5223), 496-512 (1995)
      PUBMED   7542800
   REFERENCE   6  (bases 1 to 1830138)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   7  (bases 1 to 1830138)
     CONSRTM   NCBI Microbial Genomes Annotation Project
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUN-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
               reference sequence was derived from L42023.
               COMPLETENESS: full length.
               REFSEQ gene predictions performed by GeneMark 2.4/GeneMark.hmm 2.0
               with comparison to original submitter provided annotation; tRNA
               sequences predicted using tRNAscan-SE 1.21.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
47152	47241	+	90	16271976	HI10044.1	-	^{08 Ser tRNA}
91546	91621	+	76	16271976	HI0086.2	-	^{01 Gly tRNA}
91628	91701	+	74	16271976	HI0086.1	-	^{19 Cys tRNA}
91729	91815	+	87	16271976	HI0086.3	-	^{15 Leu tRNA}
91866	91941	+	76	16271976	HI0086.4	-	^{10 Lys tRNA}
123431	123559	-	129	16271976	HI0113.2	-	5S ribosomal RNA
123800	126702	-	2903	16271976	HI0113.3	-	23S ribosomal RNA
126969	127044	-	76	16271976	HI1003.4	-	^{04 Glu tRNA}
127172	128720	-	1549	16271976	HI1003.5	-	16S ribosomal RNA
128892	128968	-	77	16271976	HI0113.6	-	^{03 Pro tRNA}
128990	129065	-	76	16271976	HI0113.7	-	^{09 His tRNA}
129092	129168	-	77	16271976	HI0113.8	-	^{11 Arg tRNA}
131584	131660	-	77	16271976	HI0116.1	-	^{16 Met tRNA}
139513	139588	+	76	16271976	HI0123.1	-	^{01 Gly tRNA}
139593	139679	+	87	16271976	HI0123.2	-	^{15 Leu tRNA}
139730	139805	+	76	16271976	HI0123.3	-	^{10 Lys tRNA}
152228	152304	-	77	16271976	HI0136.1	-	^{06 Asp tRNA}
152328	152404	-	77	16271976	HI0136.2	-	^{06 Asp tRNA}
242269	242397	-	129	16271976	HI0220.3	-	5S ribosomal RNA
242637	245539	-	2903	16271976	HI0220.4	-	23S ribosomal RNA
245806	245881	-	76	16271976	HI0220.6	-	^{04 Glu tRNA}
246009	247557	-	1549	16271976	HI0220.5	-	16S ribosomal RNA
288153	288242	-	90	16271976	HI0247.1	-	^{08 Ser tRNA}
307279	307354	-	76	16271976	HI0273.1	-	^{02 Ala tRNA}
309048	309123	+	76	16271976	HI0274.1	-	^{13 Val tRNA}
309167	309242	+	76	16271976	HI0274.2	-	^{13 Val tRNA}
309301	309376	+	76	16271976	HI0274.3	-	^{13 Val tRNA}
309429	309504	+	76	16271976	HI0274.4	-	^{13 Val tRNA}
355348	355437	-	90	16271976	HI0326.1	-	^{08 Ser tRNA}
401796	401871	-	76	16271976	HI0380.1	-	^{10 Lys tRNA}
401895	401970	-	76	16271976	HI0380.2	-	^{10 Lys tRNA}
467760	467842	+	83	16271976	HI0445.1	-	^{15 Leu tRNA}
623821	625369	+	1549	16271976	HI0601.2	-	16S ribosomal RNA
625444	625520	+	77	16271976	HI0601.6	-	^{14 Ile tRNA}
625606	625681	+	76	16271976	HI0601.7	-	^{02 Ala tRNA}
626083	628985	+	2903	16271976	HI0601.3	-	23S ribosomal RNA
629226	629354	+	129	16271976	HI0601.4	-	5S ribosomal RNA
629523	629599	+	77	16271976	HI0601.8	-	^{06 Asp tRNA}
629628	629703	+	76	16271976	HI0601.5	-	^{20 Trp tRNA}
641105	641181	+	77	16271976	HI0609.1	-	^{03 Pro tRNA}
641229	641305	+	77	16271976	HI0609.2	-	^{11 Arg tRNA}
657103	658651	+	1549	16271976	HI0621.2	-	16S ribosomal RNA
658778	658853	+	76	16271976	HI0621.5	-	^{04 Glu tRNA}
659120	662022	+	2903	16271976	HI0621.3	-	23S ribosomal RNA
662263	662391	+	129	16271976	HI0621.4	-	5S ribosomal RNA
671274	671349	+	76	16271976	HI0631.4	-	^{12 Thr tRNA}
671379	671463	+	85	16271976	HI0631.1	-	^{18 Tyr tRNA}
671506	671580	+	75	16271976	HI0631.2	-	^{01 Gly tRNA}
671584	671659	+	76	16271976	HI0631.3	-	^{12 Thr tRNA}
684859	684935	-	77	16271976	HI0642.3	-	^{11 Arg tRNA}
684993	685069	-	77	16271976	HI0642.2	-	^{11 Arg tRNA}
685090	685184	-	95	16271976	HI0642.1	-	^{08 Ser tRNA}
753791	753881	-	91	16271976	HI0707.1	-	Sec tRNA
771206	772754	+	1549	16271976	HI0723.1	-	16S ribosomal RNA
772829	772905	+	77	16271976	HI0723.2	-	^{14 Ile tRNA}
772991	773066	+	76	16271976	HI0723.5	-	^{02 Ala tRNA}
773468	776370	+	2903	16271976	HI0723.3	-	23S ribosomal RNA
776611	776739	+	129	16271976	HI0723.4	-	5S ribosomal RNA
825313	825388	+	76	16271976	HI0761.1	-	^{17 Phe tRNA}
825391	825466	+	76	16271976	HI0761.2	-	^{07 Asn tRNA}
906073	906271	+	199	16271976	HI0857.1	-	6S RNA
981435	981511	-	77	16271976	HI0923.1	-	^{16 Met tRNA}
1223883	1223996	+	114	16271976	HI1154.1	-	4.5S RNA
1324965	1325040	+	76	16271976	HI1247.1	-	^{07 Asn tRNA}
1357566	1357931	-	366	16271976	HI1281.2	-	tmRNA
1358358	1358434	+	77	16271976	HI1281.1	-	^{16 Met tRNA}
1513211	1513296	-	86	16271976	HI1424.1	-	^{15 Leu tRNA}
1576960	1577041	-	82	16271976	HI1502.1	-	Xaa tRNA
1639927	1640003	-	77	16271976	HI1572.1	-	^{13 Val tRNA}
1693872	1693946	-	75	16271976	HI1631.4	-	^{05 Gln tRNA}
1693994	1694068	-	75	16271976	HI1631.3	-	^{05 Gln tRNA}
1694097	1694181	-	85	16271976	HI1631.2	-	^{15 Leu tRNA}
1694187	1694263	-	77	16271976	HI1631.1	-	^{16 Met tRNA}
1746429	1746804	+	376	16271976	HI1677.1	-	RNaseP
1787881	1787956	+	76	16271976	HI1715.1	-	^{01 Gly tRNA}
1816484	1816598	-	115	16271976	HI1739.7	-	5S ribosomal RNA
1816839	1819741	-	2903	16271976	HI1739.6	-	23S ribosomal RNA
1820143	1820218	-	76	16271976	HI1739.5	-	^{02 Ala tRNA}
1820304	1820380	-	77	16271976	HI1739.4	-	^{14 Ile tRNA}
1820456	1822004	-	1549	16271976	HI1739.3	-	16S ribosomal RNA