Геном прокариот/Материалы:NC 003919

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_003919            5175554 bp    DNA     circular BCT 17-JAN-2006
   DEFINITION  Xanthomonas axonopodis pv. citri str. 306, complete genome.
   ACCESSION   NC_003919
   VERSION     NC_003919.1  GI:21240774
   KEYWORDS    .
   SOURCE      Xanthomonas axonopodis pv. citri str. 306
     ORGANISM  Xanthomonas axonopodis pv. citri str. 306
               Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
               Xanthomonadaceae; Xanthomonas.
   REFERENCE   1  (bases 1 to 5175554)
     AUTHORS   da Silva,A.C.R., Ferro,J.A., Reinach,F.C., Farah,C.S., Furlan,L.R.,
               Quaggio,R.B., Monteiro-Vitorello,C.B., Van Sluys,M.A., Almeida,N.F.
               Jr., Alves,L.M.C., do Amaral,A.M., Bertolini,M.C., Camargo,L.E.A.,
               Camarotte,G., Cannavan,F., Cardozo,J., Chambergo,F., Ciapina,L.P.,
               Cicarelli,R.M.B., Coutinho,L.L., Cursino-Santos,J.R., El-Dorry,H.,
               Faria,J.B., Ferreira,A.J.S., Ferreira,R.C.C., Ferro,M.I.T.,
               Formighieri,E.F., Franco,M.C., Greggio,C.C., Gruber,A.,
               Katsuyama,A.M., Kishi,L.T., Leite,R.P. Jr., Lemos,E.G.M.,
               Lemos,M.V.F., Locali,E.C., Machado,M.A., Madeira,A.M.B.N.,
               Martinez-Rossi,N.M., Martins,E.C., Meidanis,J., Menck,C.F.M.,
               Miyaki,C.Y., Moon,D.H., Moreira,L.M., Novo,M.T.M., Okura,V.K.,
               Oliveira,M.C., Oliveira,V.R., Pereira,H.A. Jr., Rossi,A.,
               Sena,J.A.D., Silva,C., de Souza,R.F., Spinola,L.A.F., Takita,M.A.,
               Tamura,R.E., Teixeira,E.C., Tezza,R.I.D., Trindade dos Santos,M.,
               Truffi,D., Tsai,S.M., White,F.F., Setubal,J.C. and Kitajima,J.P.
     TITLE     Comparison of the genomes of two Xanthomonas pathogens with
               differing host specificities
     JOURNAL   Nature 417 (6887), 459-463 (2002)
      PUBMED   12024217
   REFERENCE   2  (bases 1 to 5175554)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (29-MAY-2002) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5175554)
     AUTHORS   da Silva,A.C.R., Ferro,J.A., Reinach,F.C., Farah,C.S., Furlan,L.R.,
               Quaggio,R.B., Monteiro-Vitorello,C.B., Van Sluys,M.A., Almeida,N.F.
               Jr., Alves,L.M.C., do Amaral,A.M., Bertolini,M.C., Camargo,L.E.A.,
               Camarotte,G., Cannavan,F., Cardozo,J., Chambergo,F., Ciapina,L.P.,
               Cicarelli,R.M.B., Coutinho,L.L., Cursino-Santos,J.R., El-Dorry,H.,
               Faria,J.B., Ferreira,A.J.S., Ferreira,R.C.C., Ferro,M.I.T.,
               Formighieri,E.F., Franco,M.C., Greggio,C.C., Gruber,A.,
               Katsuyama,A.M., Kishi,L.T., Leite,R.P. Jr., Lemos,E.G.M.,
               Lemos,M.V.F., Locali,E.C., Machado,M.A., Madeira,A.M.B.N.,
               Martinez-Rossi,N.M., Martins,E.C., Meidanis,J., Menck,C.F.M.,
               Miyaki,C.Y., Moon,D.H., Moreira,L.M., Novo,M.T.M., Okura,V.K.,
               Oliveira,M.C., Oliveira,V.R., Pereira,H.A. Jr., Rossi,A.,
               Sena,J.A.D., Silva,C., de Souza,R.F., Spinola,L.A.F., Takita,M.A.,
               Tamura,R.E., Teixeira,E.C., Tezza,R.I.D., Trindade dos Santos,M.,
               Truffi,D., Tsai,S.M., White,F.F., Setubal,J.C. and Kitajima,J.P.
     TITLE     Direct Submission
     JOURNAL   Submitted (28-NOV-2001) Departmento de Bioquimica, Universidade de
               Sao Paulo, Av. Prof. Lineu Prestes 748, Sao Paulo, SP 05508-900,
               Brazil
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE008923.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
462225	462301	+	77	21240774	XAC0391	-	^{11 Arg tRNA}
577683	577757	-	75	21240774	XAC0489	-	^{05 Gln tRNA}
577810	577886	-	77	21240774	XAC0490	-	^{16 Met tRNA}
912073	912431	+	359	21240774	XAC0767	-	RNA subunit of RNase P
1111817	1111893	+	77	21240774	XAC0949	-	^{05 Gln tRNA}
1115719	1115804	+	86	21240774	XAC0954	-	^{18 Tyr tRNA}
1115834	1115907	+	74	21240774	XAC0955	-	^{01 Gly tRNA}
1115941	1116016	+	76	21240774	XAC0956	-	^{12 Thr tRNA}
1117360	1117435	+	76	21240774	XAC0958	-	^{20 Trp tRNA}
1209044	1209120	+	77	21240774	XAC1048	-	^{03 Pro tRNA}
1209163	1209239	+	77	21240774	XAC1049	-	^{11 Arg tRNA}
1209272	1209348	+	77	21240774	XAC1050	-	^{09 His tRNA}
1229179	1229254	+	76	21240774	XAC1073	-	^{10 Lys tRNA}
1231193	1231277	+	85	21240774	XAC1076	-	^{15 Leu tRNA}
1238015	1238089	+	75	21240774	XAC1082	-	^{13 Val tRNA}
1238118	1238194	+	77	21240774	XAC1083	-	^{06 Asp tRNA}
1238289	1238365	+	77	21240774	XAC1084	-	^{06 Asp tRNA}
1246283	1246373	+	91	21240774	XAC1092	-	^{08 Ser tRNA}
1259581	1259673	-	93	21240774	XAC1108	-	^{08 Ser tRNA}
1284101	1284175	+	75	21240774	XAC1134	-	^{13 Val tRNA}
1435449	1435524	+	76	21240774	XAC1257	-	^{12 Thr tRNA}
1670926	1671012	-	87	21240774	XAC1447	-	^{15 Leu tRNA}
1745670	1746069	-	400	21240774	XAC1511	-	tmRNA
1809135	1809221	-	87	21240774	XAC1565	-	^{15 Leu tRNA}
1908540	1908629	+	90	21240774	XAC1656	-	^{08 Ser tRNA}
2004911	2005003	+	93	21240774	XAC1744	-	^{08 Ser tRNA}
2011484	2011560	-	77	21240774	XAC1750	-	^{11 Arg tRNA}
2011656	2011732	-	77	21240774	XAC1751	-	^{11 Arg tRNA}
2052317	2052391	-	75	21240774	XAC1782	-	^{04 Glu tRNA}
2083089	2083165	+	77	21240774	XAC1809	-	^{11 Arg tRNA}
2403460	2403546	+	87	21240774	XAC2056	-	^{15 Leu tRNA}
2404386	2404461	-	76	21240774	XAC2058	-	^{04 Glu tRNA}
2404509	2404584	-	76	21240774	XAC2059	-	^{02 Ala tRNA}
2405343	2405418	-	76	21240774	XAC2060	-	^{04 Glu tRNA}
2405465	2405540	-	76	21240774	XAC2061	-	^{02 Ala tRNA}
2443358	2443433	+	76	21240774	XAC2094	-	^{01 Gly tRNA}
2443502	2443575	+	74	21240774	XAC2095	-	^{19 Cys tRNA}
2443657	2443732	+	76	21240774	XAC2096	-	^{01 Gly tRNA}
2458841	2458927	-	87	21240774	XAC2104	-	^{15 Leu tRNA}
2733586	2733662	+	77	21240774	XAC2339	-	^{03 Pro tRNA}
2818302	2818377	+	76	21240774	XAC2417	-	^{02 Ala tRNA}
3019036	3019111	-	76	21240774	XAC2560	-	^{17 Phe tRNA}
3047909	3047985	-	77	21240774	XAC2586	-	^{03 Pro tRNA}
3090905	3090979	-	75	21240774	XAC2624	-	^{13 Val tRNA}
3093839	3093915	+	77	21240774	XAC2627	-	^{07 Asn tRNA}
3150311	3150387	-	77	21240774	XAC2690	-	^{16 Met tRNA}
3165494	3165578	-	85	21240774	XAC2705	-	^{15 Leu tRNA}
3689881	3689956	+	76	21240774	XAC3138	-	^{10 Lys tRNA}
3877716	3877789	-	74	21240774	XAC3299	-	^{01 Gly tRNA}
4455088	4455163	-	76	21240774	XAC3786	-	^{16 Met tRNA}
4576439	4576557	-	119	21240774	XAC3892	-	SSU 5S ribosomal RNA
4576681	4579561	-	2881	21240774	XAC3893	-	SSU 23S ribosomal RNA
4579789	4579865	-	77	21240774	XAC3894	-	^{14 Ile tRNA}
4579884	4579959	-	76	21240774	XAC3895	-	^{02 Ala tRNA}
4580055	4581601	-	1547	21240774	XAC3896	-	SSU 16S ribosomal RNA
4659357	4659430	+	74	21240774	XAC3963	-	^{02 Ala tRNA}
4706162	4706237	-	76	21240774	XAC4015	-	^{12 Thr tRNA}
5065681	5065799	-	119	21240774	XAC4287	-	SSU 5S ribosomal RNA
5065923	5068803	-	2881	21240774	XAC4288	-	SSU 23S ribosomal RNA
5069031	5069107	-	77	21240774	XAC4289	-	^{14 Ile tRNA}
5069126	5069201	-	76	21240774	XAC4290	-	^{02 Ala tRNA}
5069297	5070843	-	1547	21240774	XAC4291	-	SSU 16S ribosomal RNA