Геном прокариот/Материалы:NC 004567
(перенаправлено с «Материалы:NC 004567»)
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Базовый уровень статей |
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LOCUS NC_004567 3308274 bp DNA circular BCT 21-JUN-2007
DEFINITION Lactobacillus plantarum WCFS1, complete genome.
ACCESSION NC_004567
VERSION NC_004567.1 GI:28376974
KEYWORDS .
SOURCE Lactobacillus plantarum WCFS1
ORGANISM Lactobacillus plantarum WCFS1
Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
Lactobacillus.
REFERENCE 1 (bases 1 to 3308274)
AUTHORS Kleerebezem,M., Boekhorst,J., van Kranenburg,R., Molenaar,D.,
Kuipers,O.P., Leer,R., Tarchini,R., Peters,S.A., Sandbrink,H.M.,
Fiers,M.W., Stiekema,W., Lankhorst,R.M., Bron,P.A., Hoffer,S.M.,
Groot,M.N., Kerkhoven,R., de Vries,M., Ursing,B., de Vos,W.M. and
Siezen,R.J.
TITLE Complete genome sequence of Lactobacillus plantarum WCFS1
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 100 (4), 1990-1995 (2004)
PUBMED 12566566
REFERENCE 2 (bases 1 to 3308274)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3308274)
CONSRTM NCBI Microbial Genomes Annotation Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2001) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AL935263.
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 37371 | 37446 | - | 76 | 28376974 | lp_tRNA01 | - | 10 Lys tRNA |
| 502863 | 504433 | + | 1571 | 28376974 | lp_rRNA01 | - | 16S ribosomal RNA |
| 504518 | 504592 | + | 75 | 28376974 | lp_tRNA02 | - | 14 Ile tRNA |
| 504634 | 504706 | + | 73 | 28376974 | lp_tRNA03 | - | 02 Ala tRNA |
| 504868 | 507787 | + | 2920 | 28376974 | lp_rRNA02 | - | 23S ribosomal RNA |
| 507858 | 507976 | + | 119 | 28376974 | lp_rRNA03 | - | 5S ribosomal RNA |
| 507981 | 508053 | + | 73 | 28376974 | lp_tRNA04 | - | 07 Asn tRNA |
| 508099 | 508171 | + | 73 | 28376974 | lp_tRNA05 | - | 12 Thr tRNA |
| 511258 | 511340 | + | 83 | 28376974 | lp_tRNA06 | - | 18 Tyr tRNA |
| 511350 | 511421 | + | 72 | 28376974 | lp_tRNA07 | - | 05 Gln tRNA |
| 531682 | 531769 | + | 88 | 28376974 | lp_tRNA08 | - | 15 Leu tRNA |
| 591410 | 591480 | - | 71 | 28376974 | lp_tRNA09 | - | 01 Gly tRNA |
| 593365 | 593450 | - | 86 | 28376974 | lp_tRNA10 | - | 14 Ile tRNA |
| 606324 | 606396 | + | 73 | 28376974 | lp_tRNA11 | - | 07 Asn tRNA |
| 722170 | 722244 | - | 75 | 28376974 | lp_tRNA12 | - | 11 Arg tRNA |
| 774992 | 775063 | + | 72 | 28376974 | lp_tRNA13 | - | 07 Asn tRNA |
| 934819 | 934900 | + | 82 | 28376974 | lp_tRNA14 | - | 15 Leu tRNA |
| 934904 | 934976 | + | 73 | 28376974 | lp_tRNA15 | - | 12 Thr tRNA |
| 935001 | 935072 | + | 72 | 28376974 | lp_tRNA16 | - | 01 Gly tRNA |
| 935081 | 935166 | + | 86 | 28376974 | lp_tRNA17 | - | 15 Leu tRNA |
| 935177 | 935250 | + | 74 | 28376974 | lp_tRNA18 | - | 11 Arg tRNA |
| 935258 | 935331 | + | 74 | 28376974 | lp_tRNA19 | - | 03 Pro tRNA |
| 935382 | 935455 | + | 74 | 28376974 | lp_tRNA20 | - | 03 Pro tRNA |
| 1061664 | 1061736 | + | 73 | 28376974 | lp_tRNA21 | - | 11 Arg tRNA |
| 1169165 | 1170735 | + | 1571 | 28376974 | lp_rRNA04 | - | 16S ribosomal RNA |
| 1170820 | 1170894 | + | 75 | 28376974 | lp_tRNA22 | - | 14 Ile tRNA |
| 1170936 | 1171008 | + | 73 | 28376974 | lp_tRNA23 | - | 02 Ala tRNA |
| 1171170 | 1174089 | + | 2920 | 28376974 | lp_rRNA05 | - | 23S ribosomal RNA |
| 1174160 | 1174278 | + | 119 | 28376974 | lp_rRNA06 | - | 5S ribosomal RNA |
| 1174283 | 1174355 | + | 73 | 28376974 | lp_tRNA24 | - | 07 Asn tRNA |
| 1174374 | 1174463 | + | 90 | 28376974 | lp_tRNA25 | - | 08 Ser tRNA |
| 1174485 | 1174557 | + | 73 | 28376974 | lp_tRNA26 | - | 04 Glu tRNA |
| 1174562 | 1174634 | + | 73 | 28376974 | lp_tRNA27 | - | 13 Val tRNA |
| 1174690 | 1174762 | + | 73 | 28376974 | lp_tRNA28 | - | 17 Phe tRNA |
| 1174768 | 1174850 | + | 83 | 28376974 | lp_tRNA29 | - | 18 Tyr tRNA |
| 1174859 | 1174932 | + | 74 | 28376974 | lp_tRNA30 | - | 20 Trp tRNA |
| 1174938 | 1175010 | + | 73 | 28376974 | lp_tRNA31 | - | 09 His tRNA |
| 1175018 | 1175089 | + | 72 | 28376974 | lp_tRNA32 | - | 05 Gln tRNA |
| 1175112 | 1175182 | + | 71 | 28376974 | lp_tRNA33 | - | 19 Cys tRNA |
| 1175238 | 1175325 | + | 88 | 28376974 | lp_tRNA34 | - | 15 Leu tRNA |
| 1252319 | 1252391 | - | 73 | 28376974 | lp_tRNA35 | - | 09 His tRNA |
| 1252780 | 1252863 | - | 84 | 28376974 | lp_tRNA36 | - | 15 Leu tRNA |
| 1271644 | 1271714 | + | 71 | 28376974 | lp_tRNA37 | - | 01 Gly tRNA |
| 1271771 | 1271848 | + | 78 | 28376974 | lp_tRNA38 | - | 06 Asp tRNA |
| 1448543 | 1448616 | - | 74 | 28376974 | lp_tRNA39 | - | 11 Arg tRNA |
| 1876412 | 1876499 | + | 88 | 28376974 | lp_tRNA40 | - | 08 Ser tRNA |
| 2013685 | 2013762 | - | 78 | 28376974 | lp_tRNA41 | - | 06 Asp tRNA |
| 2013765 | 2013838 | - | 74 | 28376974 | lp_tRNA42 | - | 16 Met tRNA |
| 2013848 | 2013920 | - | 73 | 28376974 | lp_tRNA43 | - | 04 Glu tRNA |
| 2013940 | 2014027 | - | 88 | 28376974 | lp_tRNA44 | - | 08 Ser tRNA |
| 2014032 | 2014106 | - | 75 | 28376974 | lp_tRNA45 | - | 14 Ile tRNA |
| 2014113 | 2014183 | - | 71 | 28376974 | lp_tRNA46 | - | 01 Gly tRNA |
| 2014196 | 2014268 | - | 73 | 28376974 | lp_tRNA47 | - | 17 Phe tRNA |
| 2014298 | 2014372 | - | 75 | 28376974 | lp_tRNA48 | - | 06 Asp tRNA |
| 2014376 | 2014449 | - | 74 | 28376974 | lp_tRNA49 | - | 16 Met tRNA |
| 2014456 | 2014545 | - | 90 | 28376974 | lp_tRNA50 | - | 08 Ser tRNA |
| 2014585 | 2014658 | - | 74 | 28376974 | lp_tRNA51 | - | 16 Met tRNA |
| 2014674 | 2014747 | - | 74 | 28376974 | lp_tRNA52 | - | 16 Met tRNA |
| 2014779 | 2014852 | - | 74 | 28376974 | lp_tRNA53 | - | 03 Pro tRNA |
| 2014858 | 2014931 | - | 74 | 28376974 | lp_tRNA54 | - | 11 Arg tRNA |
| 2014942 | 2015027 | - | 86 | 28376974 | lp_tRNA55 | - | 15 Leu tRNA |
| 2015043 | 2015114 | - | 72 | 28376974 | lp_tRNA56 | - | 01 Gly tRNA |
| 2015131 | 2015203 | - | 73 | 28376974 | lp_tRNA57 | - | 12 Thr tRNA |
| 2015298 | 2015370 | - | 73 | 28376974 | lp_tRNA58 | - | 10 Lys tRNA |
| 2015372 | 2015447 | - | 76 | 28376974 | lp_tRNA59 | - | 13 Val tRNA |
| 2015452 | 2015570 | - | 119 | 28376974 | lp_rRNA16 | - | 5S ribosomal RNA |
| 2015625 | 2015697 | - | 73 | 28376974 | lp_tRNA60 | - | 10 Lys tRNA |
| 2015699 | 2015774 | - | 76 | 28376974 | lp_tRNA61 | - | 13 Val tRNA |
| 2015779 | 2015897 | - | 119 | 28376974 | lp_rRNA07 | - | 5S ribosomal RNA |
| 2015968 | 2018887 | - | 2920 | 28376974 | lp_rRNA08 | - | 23S ribosomal RNA |
| 2019093 | 2020663 | - | 1571 | 28376974 | lp_rRNA09 | - | 16S ribosomal RNA |
| 2186916 | 2186987 | - | 72 | 28376974 | lp_tRNA62 | - | 20 Trp tRNA |
| 2187057 | 2187129 | - | 73 | 28376974 | lp_tRNA63 | - | 07 Asn tRNA |
| 2199001 | 2199086 | + | 86 | 28376974 | lp_tRNA64 | - | 14 Ile tRNA |
| 2199699 | 2199772 | + | 74 | 28376974 | lp_tRNA65 | - | 16 Met tRNA |
| 2199778 | 2199848 | + | 71 | 28376974 | lp_tRNA66 | - | 01 Gly tRNA |
| 2204049 | 2204121 | - | 73 | 28376974 | lp_tRNA67 | - | 04 Glu tRNA |
| 2204512 | 2204584 | + | 73 | 28376974 | lp_tRNA68 | - | 05 Gln tRNA |
| 2498504 | 2498576 | - | 73 | 28376974 | lp_tRNA69 | - | 12 Thr tRNA |
| 2498679 | 2498797 | - | 119 | 28376974 | lp_rRNA10 | - | 5S ribosomal RNA |
| 2498868 | 2501787 | - | 2920 | 28376974 | lp_rRNA11 | - | 23S ribosomal RNA |
| 2501993 | 2503563 | - | 1571 | 28376974 | lp_rRNA12 | - | 16S ribosomal RNA |
| 2941615 | 2941733 | - | 119 | 28376974 | lp_rRNA13 | - | 5S ribosomal RNA |
| 2941804 | 2944723 | - | 2920 | 28376974 | lp_rRNA14 | - | 23S ribosomal RNA |
| 2944929 | 2946499 | - | 1571 | 28376974 | lp_rRNA15 | - | 16S ribosomal RNA |
| 3039279 | 3039351 | + | 73 | 28376974 | lp_tRNA70 | - | 02 Ala tRNA |