Геном прокариот/Материалы:NC 005362

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_005362            1992676 bp    DNA     circular BCT 26-JAN-2007
   DEFINITION  Lactobacillus johnsonii NCC 533, complete genome.
   ACCESSION   NC_005362
   VERSION     NC_005362.1  GI:42518084
   KEYWORDS    .
   SOURCE      Lactobacillus johnsonii NCC 533
     ORGANISM  Lactobacillus johnsonii NCC 533
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Lactobacillus.
   REFERENCE   1  (bases 1 to 1992676)
     AUTHORS   van der Kaaij,H., Desiere,F., Mollet,B. and Germond,J.E.
     TITLE     L-alanine auxotrophy of Lactobacillus johnsonii as demonstrated by
               physiological, genomic, and gene complementation approaches
     JOURNAL   Appl. Environ. Microbiol. 70 (3), 1869-1873 (2004)
      PUBMED   15006820
   REFERENCE   2  (bases 1 to 1992676)
     AUTHORS   Pridmore,R.D., Berger,B., Desiere,F., Vilanova,D., Barretto,C.,
               Pittet,A.C., Zwahlen,M.C., Rouvet,M., Altermann,E., Barrangou,R.,
               Mollet,B., Mercenier,A., Klaenhammer,T., Arigoni,F. and Schell,M.A.
     TITLE     The genome sequence of the probiotic intestinal bacterium
               Lactobacillus johnsonii NCC 533
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (8), 2512-2517 (2004)
      PUBMED   14983040
   REFERENCE   3  (bases 1 to 1992676)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 1992676)
     AUTHORS   Pridmore,R.D., Berger,B., Desiere,F., Vilanova,D., Barretto,C.,
               Pittet,A.-C., Zwahlen,M.-C., Rouvet,M., Barrangou,R., Altermann,E.,
               Mollet,B., Mercenier,A., Klaenhammer,T., Arigoni,F. and Schell,M.A.
     TITLE     Direct Submission
     JOURNAL   Submitted (01-DEC-2003) Nutrition and Health, Nestle Research
               Center, P.O.Box 44, Lausanne 26, Vaud CH-1000, Switzerland
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE017198.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
19503	19578	+	76	42518084	LJT001	-	^{12 Thr tRNA}
21315	21390	+	76	42518084	LJT002	-	^{12 Thr tRNA}
85937	86009	-	73	42518084	LJT003	-	^{10 Lys tRNA}
87617	87689	-	73	42518084	LJT004	-	^{10 Lys tRNA}
209038	209110	+	73	42518084	LJT005	-	^{12 Thr tRNA}
228891	228961	-	71	42518084	LJT006	-	^{01 Gly tRNA}
327595	327669	+	75	42518084	LJT007	-	^{01 Gly tRNA}
327710	327783	+	74	42518084	LJT008	-	^{03 Pro tRNA}
340597	340667	+	71	42518084	LJT009	-	^{08 Ser tRNA}
340727	340798	+	72	42518084	LJT010	-	^{04 Glu tRNA}
340937	341018	+	82	42518084	LJT011	-	^{18 Tyr tRNA}
341099	341172	+	74	42518084	LJT012	-	^{17 Phe tRNA}
558550	560200	+	1651	42518084	LJR007	-	16S ribosomal RNA
560300	563350	+	3051	42518084	LJR013	-	23S ribosomal RNA
563337	563453	+	117	42518084	LJR002	-	5S ribosomal RNA
563466	563538	+	73	42518084	LJT013	-	^{07 Asn tRNA}
563561	563650	+	90	42518084	LJT014	-	^{08 Ser tRNA}
563769	563840	+	72	42518084	LJT015	-	^{04 Glu tRNA}
563864	563936	+	73	42518084	LJT016	-	^{13 Val tRNA}
707462	707534	+	73	42518084	LJT017	-	^{11 Arg tRNA}
775832	775903	-	72	42518084	LJT018	-	Xaa tRNA
828305	828376	+	72	42518084	LJT019	-	^{04 Glu tRNA}
828382	828454	+	73	42518084	LJT020	-	^{05 Gln tRNA}
1316937	1317009	-	73	42518084	LJT021	-	^{04 Glu tRNA}
1330469	1330556	-	88	42518084	LJT022	-	^{08 Ser tRNA}
1454674	1454747	-	74	42518084	LJT023	-	^{11 Arg tRNA}
1553948	1554034	-	87	42518084	LJT024	-	^{15 Leu tRNA}
1609296	1609384	-	89	42518084	LJT025	-	^{15 Leu tRNA}
1631292	1631363	-	72	42518084	LJT026	-	^{05 Gln tRNA}
1631419	1631500	-	82	42518084	LJT027	-	^{18 Tyr tRNA}
1633336	1633407	-	72	42518084	LJT028	-	^{05 Gln tRNA}
1643767	1643839	-	73	42518084	LJT029	-	^{12 Thr tRNA}
1659716	1659788	-	73	42518084	LJT030	-	^{07 Asn tRNA}
1659801	1659917	-	117	42518084	LJR003	-	5S ribosomal RNA
1659904	1662954	-	3051	42518084	LJR015	-	23S ribosomal RNA
1663054	1664704	-	1651	42518084	LJR008	-	16S ribosomal RNA
1665073	1665162	-	90	42518084	LJT031	-	^{08 Ser tRNA}
1665165	1665238	-	74	42518084	LJT032	-	^{14 Ile tRNA}
1665247	1665320	-	74	42518084	LJT033	-	^{01 Gly tRNA}
1665338	1665410	-	73	42518084	LJT034	-	^{17 Phe tRNA}
1665415	1665487	-	73	42518084	LJT035	-	^{06 Asp tRNA}
1665491	1665564	-	74	42518084	LJT036	-	^{16 Met tRNA}
1665596	1665669	-	74	42518084	LJT037	-	^{16 Met tRNA}
1665683	1665756	-	74	42518084	LJT038	-	^{16 Met tRNA}
1665787	1665860	-	74	42518084	LJT039	-	^{03 Pro tRNA}
1665866	1665939	-	74	42518084	LJT040	-	^{11 Arg tRNA}
1665949	1666034	-	86	42518084	LJT041	-	^{15 Leu tRNA}
1666047	1666118	-	72	42518084	LJT042	-	^{01 Gly tRNA}
1666137	1666209	-	73	42518084	LJT043	-	^{12 Thr tRNA}
1666211	1666295	-	85	42518084	LJT044	-	^{15 Leu tRNA}
1666316	1666388	-	73	42518084	LJT045	-	^{10 Lys tRNA}
1666391	1666463	-	73	42518084	LJT046	-	^{13 Val tRNA}
1666468	1666584	-	117	42518084	LJR001	-	5S ribosomal RNA
1666571	1669621	-	3051	42518084	LJR014	-	23S ribosomal RNA
1669721	1671371	-	1651	42518084	LJR009	-	16S ribosomal RNA
1677348	1677431	-	84	42518084	LJT047	-	^{15 Leu tRNA}
1677463	1677533	-	71	42518084	LJT048	-	^{19 Cys tRNA}
1677554	1677625	-	72	42518084	LJT049	-	^{05 Gln tRNA}
1677630	1677705	-	76	42518084	LJT050	-	^{09 His tRNA}
1677720	1677790	-	71	42518084	LJT051	-	^{20 Trp tRNA}
1677798	1677879	-	82	42518084	LJT052	-	^{18 Tyr tRNA}
1677884	1677956	-	73	42518084	LJT053	-	^{17 Phe tRNA}
1677962	1678034	-	73	42518084	LJT054	-	^{06 Asp tRNA}
1678038	1678111	-	74	42518084	LJT055	-	^{16 Met tRNA}
1678119	1678209	-	91	42518084	LJT056	-	^{08 Ser tRNA}
1678236	1678307	-	72	42518084	LJT057	-	^{04 Glu tRNA}
1679522	1679611	-	90	42518084	LJT058	-	^{08 Ser tRNA}
1679614	1679687	-	74	42518084	LJT059	-	^{14 Ile tRNA}
1679696	1679769	-	74	42518084	LJT060	-	^{01 Gly tRNA}
1679787	1679859	-	73	42518084	LJT061	-	^{17 Phe tRNA}
1679864	1679936	-	73	42518084	LJT062	-	^{06 Asp tRNA}
1679940	1680013	-	74	42518084	LJT063	-	^{16 Met tRNA}
1680045	1680118	-	74	42518084	LJT064	-	^{16 Met tRNA}
1680132	1680205	-	74	42518084	LJT065	-	^{16 Met tRNA}
1680236	1680309	-	74	42518084	LJT066	-	^{03 Pro tRNA}
1680315	1680388	-	74	42518084	LJT067	-	^{11 Arg tRNA}
1680398	1680483	-	86	42518084	LJT068	-	^{15 Leu tRNA}
1680496	1680567	-	72	42518084	LJT069	-	^{01 Gly tRNA}
1680586	1680658	-	73	42518084	LJT070	-	^{12 Thr tRNA}
1680660	1680744	-	85	42518084	LJT071	-	^{15 Leu tRNA}
1680765	1680837	-	73	42518084	LJT072	-	^{10 Lys tRNA}
1680840	1680912	-	73	42518084	LJT073	-	^{13 Val tRNA}
1680917	1681033	-	117	42518084	LJR004	-	5S ribosomal RNA
1681020	1684070	-	3051	42518084	LJR016	-	23S ribosomal RNA
1684170	1685820	-	1651	42518084	LJR010	-	16S ribosomal RNA
1879252	1879324	-	73	42518084	LJT074	-	^{07 Asn tRNA}
1879337	1879453	-	117	42518084	LJR005	-	5S ribosomal RNA
1879440	1882488	-	3049	42518084	LJR017	-	23S ribosomal RNA
1882545	1882617	-	73	42518084	LJT075	-	^{02 Ala tRNA}
1882653	1882726	-	74	42518084	LJT076	-	^{14 Ile tRNA}
1882821	1884471	-	1651	42518084	LJR011	-	16S ribosomal RNA
1884764	1884839	-	76	42518084	LJT077	-	^{07 Asn tRNA}
1884852	1884968	-	117	42518084	LJR006	-	5S ribosomal RNA
1884955	1888003	-	3049	42518084	LJR018	-	23S ribosomal RNA
1888060	1888132	-	73	42518084	LJT078	-	^{02 Ala tRNA}
1888168	1888241	-	74	42518084	LJT079	-	^{14 Ile tRNA}
1888336	1889986	-	1651	42518084	LJR012	-	16S ribosomal RNA