Геном прокариот/Материалы:NC 006347
(перенаправлено с «Материалы:NC 006347»)
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Базовый уровень статей |
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LOCUS NC_006347 5277274 bp DNA circular BCT 03-DEC-2005
DEFINITION Bacteroides fragilis YCH46, complete genome.
ACCESSION NC_006347
VERSION NC_006347.1 GI:53711291
KEYWORDS .
SOURCE Bacteroides fragilis YCH46
ORGANISM Bacteroides fragilis YCH46
Bacteria; Bacteroidetes; Bacteroidetes (class); Bacteroidales;
Bacteroidaceae; Bacteroides.
REFERENCE 1 (bases 1 to 5277274)
AUTHORS Kuwahara,T., Yamashita,A., Hirakawa,H., Nakayama,H., Toh,H.,
Okada,N., Kuhara,S., Hattori,M., Hayashi,T. and Ohnishi,Y.
TITLE Genomic analysis of Bacteroides fragilis reveals extensive DNA
inversions regulating cell surface adaptation
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924 (2004)
PUBMED 15466707
REFERENCE 2 (bases 1 to 5277274)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5277274)
AUTHORS Hattori,M., Yamashita,A., Toh,H., Oshima,K. and Shiba,T.
TITLE Direct Submission
JOURNAL Submitted (20-APR-2004) Kitasato Institute for Life Sciences,
1-15-1, Kitasato, Sagamihara, Kanagawa 228-8555, Japan
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AP006841.
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 74043 | 74113 | + | 71 | 53711291 | BFtRNA01 | - | 05 Gln tRNA |
| 331622 | 331696 | - | 75 | 53711291 | BFtRNA02 | - | 04 Glu tRNA |
| 473414 | 473498 | - | 85 | 53711291 | BFtRNA03 | - | 15 Leu tRNA |
| 589029 | 589101 | + | 73 | 53711291 | BFtRNA04 | - | 01 Gly tRNA |
| 589116 | 589199 | + | 84 | 53711291 | BFtRNA05 | - | 15 Leu tRNA |
| 614061 | 614133 | - | 73 | 53711291 | BFtRNA06 | - | 03 Pro tRNA |
| 614146 | 614218 | - | 73 | 53711291 | BFtRNA07 | - | 17 Phe tRNA |
| 695538 | 695614 | - | 77 | 53711291 | BFtRNA08 | - | 16 Met tRNA |
| 770190 | 770262 | - | 73 | 53711291 | BFtRNA09 | - | 10 Lys tRNA |
| 879289 | 879366 | - | 78 | 53711291 | BFtRNA10 | - | 03 Pro tRNA |
| 923978 | 924051 | + | 74 | 53711291 | BFtRNA11 | - | 05 Gln tRNA |
| 1157377 | 1157452 | - | 76 | 53711291 | BFtRNA12 | - | 01 Gly tRNA |
| 1157458 | 1157543 | - | 86 | 53711291 | BFtRNA13 | - | 18 Tyr tRNA |
| 1422325 | 1422401 | + | 77 | 53711291 | BFtRNA14 | - | 12 Thr tRNA |
| 1506263 | 1506350 | + | 88 | 53711291 | BFtRNA15 | - | 08 Ser tRNA |
| 1584834 | 1584918 | + | 85 | 53711291 | BFtRNA16 | - | 08 Ser tRNA |
| 1662518 | 1662589 | + | 72 | 53711291 | BFtRNA17 | - | 19 Cys tRNA |
| 1690948 | 1691024 | - | 77 | 53711291 | BFtRNA18 | - | 12 Thr tRNA |
| 1970118 | 1970190 | - | 73 | 53711291 | BFtRNA19 | - | 12 Thr tRNA |
| 2136557 | 2136643 | + | 87 | 53711291 | BFtRNA20 | - | 08 Ser tRNA |
| 2136722 | 2136796 | + | 75 | 53711291 | BFtRNA21 | - | 04 Glu tRNA |
| 2330044 | 2330116 | - | 73 | 53711291 | BFtRNA22 | - | 10 Lys tRNA |
| 2410290 | 2410366 | + | 77 | 53711291 | BFtRNA23 | - | 06 Asp tRNA |
| 2609966 | 2610042 | + | 77 | 53711291 | BFtRNA24 | - | 11 Arg tRNA |
| 2660087 | 2660162 | - | 76 | 53711291 | BFtRNA25 | - | 10 Lys tRNA |
| 2663447 | 2663522 | - | 76 | 53711291 | BFtRNA26 | - | 10 Lys tRNA |
| 2726254 | 2726331 | - | 78 | 53711291 | BFtRNA27 | - | 03 Pro tRNA |
| 2726365 | 2726442 | - | 78 | 53711291 | BFtRNA28 | - | 03 Pro tRNA |
| 2780183 | 2780259 | - | 77 | 53711291 | BFtRNA29 | - | 11 Arg tRNA |
| 2780282 | 2780355 | - | 74 | 53711291 | BFtRNA30 | - | 11 Arg tRNA |
| 2780374 | 2780447 | - | 74 | 53711291 | BFtRNA31 | - | 11 Arg tRNA |
| 2858417 | 2858492 | - | 76 | 53711291 | BFtRNA32 | - | 01 Gly tRNA |
| 2904202 | 2904274 | - | 73 | 53711291 | BFtRNA33 | - | 01 Gly tRNA |
| 2904279 | 2904363 | - | 85 | 53711291 | BFtRNA34 | - | 15 Leu tRNA |
| 2904426 | 2904501 | - | 76 | 53711291 | BFtRNA35 | - | 01 Gly tRNA |
| 2904524 | 2904607 | - | 84 | 53711291 | BFtRNA36 | - | 15 Leu tRNA |
| 2904642 | 2904726 | - | 85 | 53711291 | BFtRNA37 | - | 15 Leu tRNA |
| 2904752 | 2904824 | - | 73 | 53711291 | BFtRNA38 | - | 01 Gly tRNA |
| 3140678 | 3140786 | - | 109 | 53711291 | BF5SrRNA01 | - | 5S ribosomal RNA |
| 3140885 | 3143762 | - | 2878 | 53711291 | BF23SrRNA01 | - | 23S ribosomal RNA |
| 3143917 | 3143990 | - | 74 | 53711291 | BFtRNA39 | - | 02 Ala tRNA |
| 3144019 | 3144095 | - | 77 | 53711291 | BFtRNA40 | - | 14 Ile tRNA |
| 3144323 | 3145859 | - | 1537 | 53711291 | BF16SrRNA01 | - | 16S ribosomal RNA |
| 3453440 | 3453513 | + | 74 | 53711291 | BFtRNA41 | - | 06 Asp tRNA |
| 3453544 | 3453620 | + | 77 | 53711291 | BFtRNA42 | - | 06 Asp tRNA |
| 3655080 | 3655155 | + | 76 | 53711291 | BFtRNA43 | - | 09 His tRNA |
| 3713658 | 3713731 | + | 74 | 53711291 | BFtRNA44 | - | 02 Ala tRNA |
| 3944277 | 3944385 | - | 109 | 53711291 | BF5SrRNA02 | - | 5S ribosomal RNA |
| 3944484 | 3947362 | - | 2879 | 53711291 | BF23SrRNA02 | - | 23S ribosomal RNA |
| 3947513 | 3947586 | - | 74 | 53711291 | BFtRNA45 | - | 02 Ala tRNA |
| 3947615 | 3947691 | - | 77 | 53711291 | BFtRNA46 | - | 14 Ile tRNA |
| 3947850 | 3949386 | - | 1537 | 53711291 | BF16SrRNA02 | - | 16S ribosomal RNA |
| 3956374 | 3956446 | + | 73 | 53711291 | BFtRNA47 | - | 17 Phe tRNA |
| 3972876 | 3972949 | + | 74 | 53711291 | BFtRNA48 | - | |
| 4095270 | 4095342 | + | 73 | 53711291 | BFtRNA49 | - | 20 Trp tRNA |
| 4249141 | 4249228 | - | 88 | 53711291 | BFtRNA50 | - | 08 Ser tRNA |
| 4350360 | 4350434 | - | 75 | 53711291 | BFtRNA51 | - | 11 Arg tRNA |
| 4523401 | 4523509 | - | 109 | 53711291 | BF5SrRNA03 | - | 5S ribosomal RNA |
| 4523608 | 4526486 | - | 2879 | 53711291 | BF23SrRNA03 | - | 23S ribosomal RNA |
| 4526637 | 4526710 | - | 74 | 53711291 | BFtRNA52 | - | 02 Ala tRNA |
| 4526739 | 4526815 | - | 77 | 53711291 | BFtRNA53 | - | 14 Ile tRNA |
| 4527043 | 4528579 | - | 1537 | 53711291 | BF16SrRNA03 | - | 16S ribosomal RNA |
| 4590511 | 4590585 | - | 75 | 53711291 | BFtRNA54 | - | 13 Val tRNA |
| 4590637 | 4590711 | - | 75 | 53711291 | BFtRNA55 | - | 13 Val tRNA |
| 4590738 | 4590815 | - | 78 | 53711291 | BFtRNA56 | - | 13 Val tRNA |
| 4672821 | 4672929 | - | 109 | 53711291 | BF5SrRNA04 | - | 5S ribosomal RNA |
| 4673028 | 4675905 | - | 2878 | 53711291 | BF23SrRNA04 | - | 23S ribosomal RNA |
| 4676056 | 4676129 | - | 74 | 53711291 | BFtRNA57 | - | 02 Ala tRNA |
| 4676158 | 4676234 | - | 77 | 53711291 | BFtRNA58 | - | 14 Ile tRNA |
| 4676388 | 4677924 | - | 1537 | 53711291 | BF16SrRNA04 | - | 16S ribosomal RNA |
| 4717266 | 4717341 | + | 76 | 53711291 | BFtRNA59 | - | 16 Met tRNA |
| 4732179 | 4732287 | - | 109 | 53711291 | BF5SrRNA05 | - | 5S ribosomal RNA |
| 4732386 | 4735263 | - | 2878 | 53711291 | BF23SrRNA05 | - | 23S ribosomal RNA |
| 4735413 | 4735486 | - | 74 | 53711291 | BFtRNA60 | - | 02 Ala tRNA |
| 4735515 | 4735591 | - | 77 | 53711291 | BFtRNA61 | - | 14 Ile tRNA |
| 4735744 | 4737280 | - | 1537 | 53711291 | BF16SrRNA05 | - | 16S ribosomal RNA |
| 4793735 | 4793810 | - | 76 | 53711291 | BFtRNA62 | - | 20 Trp tRNA |
| 4795099 | 4795170 | - | 72 | 53711291 | BFtRNA63 | - | 12 Thr tRNA |
| 4795181 | 4795253 | - | 73 | 53711291 | BFtRNA64 | - | 01 Gly tRNA |
| 4795282 | 4795367 | - | 86 | 53711291 | BFtRNA65 | - | 18 Tyr tRNA |
| 4795439 | 4795515 | - | 77 | 53711291 | BFtRNA66 | - | 12 Thr tRNA |
| 4810635 | 4810722 | + | 88 | 53711291 | BFtRNA67 | - | |
| 4919402 | 4919485 | - | 84 | 53711291 | BFtRNA68 | - | 15 Leu tRNA |
| 4989982 | 4990055 | + | 74 | 53711291 | BFtRNA69 | - | 07 Asn tRNA |
| 4990085 | 4990161 | + | 77 | 53711291 | BFtRNA70 | - | 07 Asn tRNA |
| 5081003 | 5081077 | - | 75 | 53711291 | BFtRNA71 | - | 11 Arg tRNA |
| 5184390 | 5184463 | + | 74 | 53711291 | BFtRNA72 | - | 16 Met tRNA |
| 5191939 | 5192047 | - | 109 | 53711291 | BF5SrRNA06 | - | 5S ribosomal RNA |
| 5192146 | 5195023 | - | 2878 | 53711291 | BF23SrRNA06 | - | 23S ribosomal RNA |
| 5195173 | 5195246 | - | 74 | 53711291 | BFtRNA73 | - | 02 Ala tRNA |
| 5195275 | 5195351 | - | 77 | 53711291 | BFtRNA74 | - | 14 Ile tRNA |
| 5195504 | 5197040 | - | 1537 | 53711291 | BF16SrRNA06 | - | 16S ribosomal RNA |