Геном прокариот/Материалы:NC 007333
(перенаправлено с «Материалы:NC 007333»)
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Базовый уровень статей |
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LOCUS NC_007333 3642249 bp DNA circular BCT 16-AUG-2007
DEFINITION Thermobifida fusca YX, complete genome.
ACCESSION NC_007333
VERSION NC_007333.1 GI:72160406
KEYWORDS .
SOURCE Thermobifida fusca YX
ORGANISM Thermobifida fusca YX
Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
Streptosporangineae; Nocardiopsaceae; Thermobifida.
REFERENCE 1 (bases 1 to 3642249)
AUTHORS Lykidis,A., Mavromatis,K., Ivanova,N., Anderson,I., Land,M.,
DiBartolo,G., Martinez,M., Lapidus,A., Lucas,S., Copeland,A.,
Richardson,P., Wilson,D.B. and Kyrpides,N.
TITLE Genome sequence and analysis of the soil cellulolytic actinomycete
Thermobifida fusca YX
JOURNAL J. Bacteriol. 189 (6), 2477-2486 (2007)
PUBMED 17209016
REFERENCE 2 (bases 1 to 3642249)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3642249)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
Chain,P., Schmutz,J., Larimer,F., Land,M., Lykidis,A. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000088.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available from David Wilson
(dbw3@cornell.edu)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-PGF
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 12591 | 12664 | + | 74 | 72160406 | Tfu_R0001 | - | 14 Ile tRNA |
| 32306 | 32393 | + | 88 | 72160406 | Tfu_R0002 | - | 08 Ser tRNA |
| 57392 | 57483 | - | 92 | 72160406 | Tfu_R0003 | - | SRP RNA; RNA component of signal recognitionparticle |
| 57613 | 57697 | + | 85 | 72160406 | Tfu_R0004 | - | 08 Ser tRNA |
| 106706 | 106795 | - | 90 | 72160406 | Tfu_R0005 | - | 08 Ser tRNA |
| 128270 | 128346 | - | 77 | 72160406 | Tfu_R0006 | - | 03 Pro tRNA |
| 243307 | 243382 | + | 76 | 72160406 | Tfu_R0007 | - | 12 Thr tRNA |
| 413892 | 413967 | - | 76 | 72160406 | Tfu_R0008 | - | 11 Arg tRNA |
| 423371 | 423444 | + | 74 | 72160406 | Tfu_R0009 | - | 02 Ala tRNA |
| 465582 | 465653 | + | 72 | 72160406 | Tfu_R0010 | - | 05 Gln tRNA |
| 489279 | 489352 | + | 74 | 72160406 | Tfu_R0011 | - | 15 Leu tRNA |
| 616275 | 616351 | + | 77 | 72160406 | Tfu_R0012 | - | 16 Met tRNA |
| 616612 | 616688 | + | 77 | 72160406 | Tfu_R0013 | - | 16 Met tRNA |
| 726244 | 726315 | + | 72 | 72160406 | Tfu_R0014 | - | 05 Gln tRNA |
| 726378 | 726450 | + | 73 | 72160406 | Tfu_R0015 | - | 04 Glu tRNA |
| 726571 | 726646 | + | 76 | 72160406 | Tfu_R0016 | - | 04 Glu tRNA |
| 1027508 | 1027583 | + | 76 | 72160406 | Tfu_R0017 | - | 07 Asn tRNA |
| 1037549 | 1037625 | + | 77 | 72160406 | Tfu_R0018 | - | 16 Met tRNA |
| 1377115 | 1377201 | - | 87 | 72160406 | Tfu_R0019 | - | 15 Leu tRNA |
| 1443042 | 1443115 | - | 74 | 72160406 | Tfu_R0020 | - | 03 Pro tRNA |
| 2284041 | 2284368 | - | 328 | 72160406 | Tfu_R0021 | - | RNA component of RNaseP |
| 2296780 | 2296853 | - | 74 | 72160406 | Tfu_R0022 | - | 13 Val tRNA |
| 2386815 | 2386930 | - | 116 | 72160406 | Tfu_R0023 | - | 5S ribosomal RNA |
| 2387032 | 2390133 | - | 3102 | 72160406 | Tfu_R0024 | - | 23S ribosomal RNA |
| 2390559 | 2392029 | - | 1471 | 72160406 | Tfu_R0025 | - | 16S ribosomal RNA |
| 2471210 | 2471286 | - | 77 | 72160406 | Tfu_R0026 | - | 13 Val tRNA |
| 2474102 | 2474177 | + | 76 | 72160406 | Tfu_R0027 | - | 01 Gly tRNA |
| 2474212 | 2474284 | + | 73 | 72160406 | Tfu_R0028 | - | 01 Gly tRNA |
| 2474311 | 2474385 | + | 75 | 72160406 | Tfu_R0029 | - | 13 Val tRNA |
| 2476556 | 2476628 | + | 73 | 72160406 | Tfu_R0030 | - | 01 Gly tRNA |
| 2476669 | 2476739 | + | 71 | 72160406 | Tfu_R0031 | - | 19 Cys tRNA |
| 2476757 | 2476831 | + | 75 | 72160406 | Tfu_R0032 | - | 13 Val tRNA |
| 2544226 | 2544298 | - | 73 | 72160406 | Tfu_R0033 | - | 02 Ala tRNA |
| 2544721 | 2544793 | - | 73 | 72160406 | Tfu_R0034 | - | 02 Ala tRNA |
| 2579506 | 2579583 | - | 78 | 72160406 | Tfu_R0035 | - | 03 Pro tRNA |
| 2579691 | 2579761 | + | 71 | 72160406 | Tfu_R0036 | - | 01 Gly tRNA |
| 2620594 | 2620669 | - | 76 | 72160406 | Tfu_R0037 | - | 11 Arg tRNA |
| 2673862 | 2673934 | + | 73 | 72160406 | Tfu_R0038 | - | 09 His tRNA |
| 2729672 | 2729747 | - | 76 | 72160406 | Tfu_R0039 | - | 10 Lys tRNA |
| 2731568 | 2731643 | - | 76 | 72160406 | Tfu_R0040 | - | 10 Lys tRNA |
| 2776923 | 2776998 | + | 76 | 72160406 | Tfu_R0041 | - | 15 Leu tRNA |
| 2781709 | 2781824 | - | 116 | 72160406 | Tfu_R0042 | - | 5S ribosomal RNA |
| 2781926 | 2785027 | - | 3102 | 72160406 | Tfu_R0043 | - | 23S ribosomal RNA |
| 2785453 | 2786923 | - | 1471 | 72160406 | Tfu_R0044 | - | 16S ribosomal RNA |
| 2849594 | 2849668 | + | 75 | 72160406 | Tfu_R0045 | - | 11 Arg tRNA |
| 2911968 | 2912337 | - | 370 | 72160406 | Tfu_R0046 | - | tmRNA |
| 3039071 | 3039186 | - | 116 | 72160406 | Tfu_R0047 | - | 5S ribosomal RNA |
| 3039288 | 3042389 | - | 3102 | 72160406 | Tfu_R0048 | - | 23S ribosomal RNA |
| 3042912 | 3044382 | - | 1471 | 72160406 | Tfu_R0049 | - | 16S ribosomal RNA |
| 3129045 | 3129120 | - | 76 | 72160406 | Tfu_R0050 | - | 20 Trp tRNA |
| 3135409 | 3135484 | - | 76 | 72160406 | Tfu_R0051 | - | 16 Met tRNA |
| 3135588 | 3135663 | - | 76 | 72160406 | Tfu_R0052 | - | 12 Thr tRNA |
| 3144854 | 3144936 | - | 83 | 72160406 | Tfu_R0053 | - | 18 Tyr tRNA |
| 3259061 | 3259134 | - | 74 | 72160406 | Tfu_R0054 | - | 12 Thr tRNA |
| 3272883 | 3272968 | + | 86 | 72160406 | Tfu_R0055 | - | 15 Leu tRNA |
| 3355836 | 3355908 | - | 73 | 72160406 | Tfu_R0056 | - | 17 Phe tRNA |
| 3355937 | 3356011 | - | 75 | 72160406 | Tfu_R0057 | - | 06 Asp tRNA |
| 3356132 | 3356204 | - | 73 | 72160406 | Tfu_R0058 | - | 04 Glu tRNA |
| 3372207 | 3372282 | - | 76 | 72160406 | Tfu_R0059 | - | 10 Lys tRNA |
| 3447314 | 3447387 | + | 74 | 72160406 | Tfu_R0060 | - | 01 Gly tRNA |
| 3458625 | 3458697 | - | 73 | 72160406 | Tfu_R0061 | - | 11 Arg tRNA |
| 3539236 | 3539327 | + | 92 | 72160406 | Tfu_R0062 | - | 08 Ser tRNA |
| 3574916 | 3575001 | - | 86 | 72160406 | Tfu_R0063 | - | 15 Leu tRNA |
| 3588493 | 3588565 | - | 73 | 72160406 | Tfu_R0064 | - | 02 Ala tRNA |
| 3590712 | 3590827 | - | 116 | 72160406 | Tfu_R0065 | - | 5S ribosomal RNA |
| 3590929 | 3594030 | - | 3102 | 72160406 | Tfu_R0066 | - | 23S ribosomal RNA |
| 3594580 | 3596050 | - | 1471 | 72160406 | Tfu_R0067 | - | 16S ribosomal RNA |