Геном прокариот/Материалы:NC 007778
(перенаправлено с «Материалы:NC 007778»)
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Базовый уровень статей |
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LOCUS NC_007778 5331656 bp DNA circular BCT 30-MAR-2006
DEFINITION Rhodopseudomonas palustris HaA2, complete genome.
ACCESSION NC_007778
VERSION NC_007778.1 GI:86747127
KEYWORDS .
SOURCE Rhodopseudomonas palustris HaA2
ORGANISM Rhodopseudomonas palustris HaA2
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Bradyrhizobiaceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 5331656)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Pelletier,D.A., Kyrpides,N., Anderson,I., Oda,Y.,
Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris HaA2
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5331656)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (07-FEB-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5331656)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Pelletier,D.A., Kyrpides,N., Anderson,I., Oda,Y.,
Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (20-JAN-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000250.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available from Caroline Harwood
(csh5@u.washington.edu)
Contact: Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 121051 | 121126 | + | 76 | 86747127 | RPB_R0001 | - | 02 Ala tRNA |
| 242172 | 242261 | - | 90 | 86747127 | RPB_R0002 | - | 08 Ser tRNA |
| 278861 | 278950 | - | 90 | 86747127 | RPB_R0003 | - | 08 Ser tRNA |
| 336013 | 336087 | + | 75 | 86747127 | RPB_R0004 | - | 01 Gly tRNA |
| 351131 | 351207 | - | 77 | 86747127 | RPB_R0005 | - | Xaa tRNA |
| 354073 | 354148 | - | 76 | 86747127 | RPB_R0006 | - | 12 Thr tRNA |
| 500043 | 500117 | - | 75 | 86747127 | RPB_R0007 | - | 04 Glu tRNA |
| 557873 | 557957 | + | 85 | 86747127 | RPB_R0008 | - | 15 Leu tRNA |
| 633139 | 633215 | + | 77 | 86747127 | RPB_R0009 | - | 11 Arg tRNA |
| 729941 | 730016 | + | 76 | 86747127 | RPB_R0010 | - | 02 Ala tRNA |
| 742456 | 742562 | + | 107 | 86747127 | RPB_R0011 | - | RNA component of signal recognition particle |
| 744308 | 744394 | - | 87 | 86747127 | RPB_R0012 | - | 15 Leu tRNA |
| 771267 | 771343 | + | 77 | 86747127 | RPB_R0013 | - | 11 Arg tRNA |
| 898097 | 898170 | + | 74 | 86747127 | RPB_R0014 | - | 01 Gly tRNA |
| 1059854 | 1059943 | + | 90 | 86747127 | RPB_R0015 | - | 08 Ser tRNA |
| 1294504 | 1294585 | + | 82 | 86747127 | RPB_R0016 | - | |
| 1294586 | 1294676 | + | 91 | 86747127 | RPB_R0017 | - | |
| 1301820 | 1301896 | + | 77 | 86747127 | RPB_R0018 | - | 03 Pro tRNA |
| 1661209 | 1661285 | + | 77 | 86747127 | RPB_R0019 | - | 09 His tRNA |
| 1711367 | 1711442 | - | 76 | 86747127 | RPB_R0020 | - | Xaa tRNA |
| 2225557 | 2225706 | - | 150 | 86747127 | RPB_R0021 | - | |
| 2253044 | 2253412 | - | 369 | 86747127 | RPB_R0022 | - | RNA component of RNaseP |
| 2311889 | 2312218 | - | 330 | 86747127 | RPB_R0023 | - | tmRNA |
| 2372364 | 2372437 | - | 74 | 86747127 | RPB_R0024 | - | 05 Gln tRNA |
| 2420157 | 2420243 | + | 87 | 86747127 | RPB_R0025 | - | 15 Leu tRNA |
| 2493652 | 2493726 | + | 75 | 86747127 | RPB_R0026 | - | 12 Thr tRNA |
| 2496079 | 2496164 | + | 86 | 86747127 | RPB_R0027 | - | 18 Tyr tRNA |
| 2603980 | 2604053 | + | 74 | 86747127 | RPB_R0028 | - | 01 Gly tRNA |
| 2616419 | 2616494 | + | 76 | 86747127 | RPB_R0029 | - | 20 Trp tRNA |
| 2715461 | 2715537 | - | 77 | 86747127 | RPB_R0030 | - | 11 Arg tRNA |
| 2726839 | 2726923 | + | 85 | 86747127 | RPB_R0031 | - | 15 Leu tRNA |
| 2939436 | 2939520 | + | 85 | 86747127 | RPB_R0032 | - | 15 Leu tRNA |
| 2946494 | 2946570 | - | 77 | 86747127 | RPB_R0033 | - | 13 Val tRNA |
| 2953560 | 2953636 | + | 77 | 86747127 | RPB_R0034 | - | 06 Asp tRNA |
| 3031532 | 3031609 | + | 78 | 86747127 | RPB_R0035 | - | 03 Pro tRNA |
| 3263143 | 3263218 | + | 76 | 86747127 | RPB_R0036 | - | 10 Lys tRNA |
| 3297966 | 3298040 | + | 75 | 86747127 | RPB_R0037 | - | 07 Asn tRNA |
| 3299403 | 3299476 | - | 74 | 86747127 | RPB_R0038 | - | 19 Cys tRNA |
| 3334358 | 3334434 | + | 77 | 86747127 | RPB_R0039 | - | 11 Arg tRNA |
| 3349909 | 3349985 | - | 77 | 86747127 | RPB_R0040 | - | 03 Pro tRNA |
| 3354193 | 3354267 | + | 75 | 86747127 | RPB_R0041 | - | 04 Glu tRNA |
| 3462484 | 3462577 | + | 94 | 86747127 | RPB_R0042 | - | 08 Ser tRNA |
| 3470486 | 3470575 | + | 90 | 86747127 | RPB_R0043 | - | 08 Ser tRNA |
| 3805275 | 3805350 | - | 76 | 86747127 | RPB_R0044 | - | 10 Lys tRNA |
| 4276466 | 4276571 | + | 106 | 86747127 | RPB_R0045 | - | |
| 4397101 | 4397177 | - | 77 | 86747127 | RPB_R0046 | - | 16 Met tRNA |
| 4456738 | 4456813 | - | 76 | 86747127 | RPB_R0047 | - | 16 Met tRNA |
| 4478622 | 4478696 | + | 75 | 86747127 | RPB_R0048 | - | 13 Val tRNA |
| 4479137 | 4479222 | - | 86 | 86747127 | RPB_R0049 | - | 01 Gly tRNA |
| 4685836 | 4685912 | - | 77 | 86747127 | RPB_R0050 | - | 16 Met tRNA |
| 4820570 | 4820684 | - | 115 | 86747127 | RPB_R0051 | - | 5S ribosomal RNA |
| 4820799 | 4823628 | - | 2830 | 86747127 | RPB_R0052 | - | 23S ribosomal RNA |
| 4824027 | 4824102 | - | 76 | 86747127 | RPB_R0053 | - | 02 Ala tRNA |
| 4824136 | 4824212 | - | 77 | 86747127 | RPB_R0054 | - | 14 Ile tRNA |
| 4824444 | 4825909 | - | 1466 | 86747127 | RPB_R0055 | - | 16S ribosomal RNA |
| 4930083 | 4930158 | - | 76 | 86747127 | RPB_R0056 | - | 17 Phe tRNA |
| 4941426 | 4941500 | + | 75 | 86747127 | RPB_R0057 | - | 12 Thr tRNA |
| 5041326 | 5041400 | - | 75 | 86747127 | RPB_R0058 | - | 05 Gln tRNA |
| 5102616 | 5102690 | - | 75 | 86747127 | RPB_R0059 | - | 13 Val tRNA |
| 5262228 | 5262304 | + | 77 | 86747127 | RPB_R0060 | - | 11 Arg tRNA |