Геном прокариот/Материалы:NC 007802

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007802            4317977 bp    DNA     circular BCT 30-MAR-2006
   DEFINITION  Jannaschia sp. CCS1, complete genome.
   ACCESSION   NC_007802
   VERSION     NC_007802.1  GI:89052491
   KEYWORDS    .
   SOURCE      Jannaschia sp. CCS1
     ORGANISM  Jannaschia sp. CCS1
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Jannaschia.
   REFERENCE   1  (bases 1 to 4317977)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D.,
               Han,C., Tapia,R., Gilna,P., Chertkov,O., Saunders,E., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Moran,M.A., Belas,R.,
               Ye,W., Buchan,A., Gonzalez,J.M., Schell,M.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Jannaschia sp. CCS1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4317977)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (01-MAR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4317977)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D.,
               Han,C., Tapia,R., Gilna,P., Chertkov,O., Saunders,E., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Moran,M.A., Belas,R.,
               Ye,W., Buchan,A., Gonzalez,J.M., Schell,M.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (23-FEB-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000264.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Mary Ann Moran
               (mmoran@uga.edu)
               Contacts: Mary Ann Moran (mmoran@uga.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
121018	121094	+	77	89052491	Jann_R0001	-	^{03 Pro tRNA}
236994	237080	-	87	89052491	Jann_R0002	-	^{15 Leu tRNA}
318356	318432	-	77	89052491	Jann_R0003	-	^{11 Arg tRNA}
325459	325534	-	76	89052491	Jann_R0004	-	^{10 Lys tRNA}
336726	336841	-	116	89052491	Jann_R0005	-
546394	546469	+	76	89052491	Jann_R0006	-	^{20 Trp tRNA}
618250	618326	+	77	89052491	Jann_R0007	-	^{11 Arg tRNA}
795771	795846	+	76	89052491	Jann_R0008	-	^{02 Ala tRNA}
1178199	1178546	-	348	89052491	Jann_R0009	-	RNA component of RNaseP
1211447	1211533	+	87	89052491	Jann_R0010	-	^{15 Leu tRNA}
1240889	1240978	+	90	89052491	Jann_R0011	-	^{08 Ser tRNA}
1489240	1489323	+	84	89052491	Jann_R0012	-	^{15 Leu tRNA}
1770624	1770700	-	77	89052491	Jann_R0013	-	^{03 Pro tRNA}
1817951	1818025	-	75	89052491	Jann_R0014	-	^{07 Asn tRNA}
1820377	1820453	-	77	89052491	Jann_R0015	-	^{16 Met tRNA}
1967604	1967677	-	74	89052491	Jann_R0016	-	^{01 Gly tRNA}
1997062	1997151	+	90	89052491	Jann_R0017	-	^{08 Ser tRNA}
2146891	2146967	+	77	89052491	Jann_R0018	-	^{11 Arg tRNA}
2259261	2259475	-	215	89052491	Jann_R0019	-
2285359	2285448	-	90	89052491	Jann_R0020	-	^{08 Ser tRNA}
2392003	2392321	+	319	89052491	Jann_R0021	-	tmRNA
2471282	2471358	-	77	89052491	Jann_R0022	-	^{03 Pro tRNA}
2491311	2491395	-	85	89052491	Jann_R0023	-	^{15 Leu tRNA}
2508751	2508827	-	77	89052491	Jann_R0024	-	^{06 Asp tRNA}
2509178	2509254	-	77	89052491	Jann_R0025	-	^{06 Asp tRNA}
2513565	2513640	-	76	89052491	Jann_R0026	-	^{13 Val tRNA}
2514358	2514432	-	75	89052491	Jann_R0027	-	^{13 Val tRNA}
2648503	2648578	-	76	89052491	Jann_R0028	-	^{12 Thr tRNA}
2805559	2805633	+	75	89052491	Jann_R0029	-	^{01 Gly tRNA}
2814922	2815005	+	84	89052491	Jann_R0030	-	Xaa tRNA
2889361	2889435	-	75	89052491	Jann_R0031	-	^{17 Phe tRNA}
2907755	2907829	+	75	89052491	Jann_R0032	-	^{12 Thr tRNA}
2937348	2937421	-	74	89052491	Jann_R0033	-	^{01 Gly tRNA}
2957972	2958160	-	189	89052491	Jann_R0034	-
3023715	3023789	+	75	89052491	Jann_R0035	-	^{04 Glu tRNA}
3256789	3256876	+	88	89052491	Jann_R0036	-	^{15 Leu tRNA}
3310119	3310192	+	74	89052491	Jann_R0037	-	^{19 Cys tRNA}
3456370	3456446	-	77	89052491	Jann_R0038	-	^{09 His tRNA}
3578447	3578536	+	90	89052491	Jann_R0039	-	^{08 Ser tRNA}
3675590	3675666	-	77	89052491	Jann_R0040	-	^{11 Arg tRNA}
3691970	3692073	+	104	89052491	Jann_R0041	-
3692077	3692151	+	75	89052491	Jann_R0042	-
3734324	3734398	+	75	89052491	Jann_R0043	-	^{05 Gln tRNA}
3789301	3789377	+	77	89052491	Jann_R0044	-	^{16 Met tRNA}
3970799	3970899	+	101	89052491	Jann_R0045	-	SRP RNA; RNA component of signal recognition particle
4078359	4078435	-	77	89052491	Jann_R0046	-	^{16 Met tRNA}
4078796	4078910	-	115	89052491	Jann_R0047	-	5S ribosomal RNA
4079054	4082437	-	3384	89052491	Jann_R0048	-	23S ribosomal RNA
4082846	4082921	-	76	89052491	Jann_R0049	-	^{02 Ala tRNA}
4082993	4083069	-	77	89052491	Jann_R0050	-	^{14 Ile tRNA}
4083217	4084677	-	1461	89052491	Jann_R0051	-	16S ribosomal RNA
4101511	4101585	+	75	89052491	Jann_R0052	-	^{13 Val tRNA}
4190344	4190419	+	76	89052491	Jann_R0053	-	^{12 Thr tRNA}