Геном прокариот/Материалы:NC 007929

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007929            1827111 bp    DNA     circular BCT 03-MAY-2006
   DEFINITION  Lactobacillus salivarius subsp. salivarius UCC118, complete genome.
   ACCESSION   NC_007929
   VERSION     NC_007929.1  GI:90960990
   KEYWORDS    .
   SOURCE      Lactobacillus salivarius subsp. salivarius UCC118
     ORGANISM  Lactobacillus salivarius subsp. salivarius UCC118
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Lactobacillus.
   REFERENCE   1  (bases 1 to 1827111)
     AUTHORS   Claesson,M.J., Li,Y., Leahy,S., Canchaya,C., van Pijkeren,J.P.,
               Cerdeno-Tarraga,A.M., Parkhill,J., Flynn,S., O'sullivan,G.C.,
               Collins,J.K., Higgins,D., Shanahan,F., Fitzgerald,G.F., van
               Sinderen,D. and O'toole,P.W.
     TITLE     From the Cover: Multireplicon genome architecture of Lactobacillus
               salivarius
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (17), 6718-6723 (2006)
      PUBMED   16617113
   REFERENCE   2  (bases 1 to 1827111)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (01-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1827111)
     AUTHORS   Claesson,M.J., Li,Y., Leahy,S., Canchaya,C., van Pijkeren,J.P.,
               Cerdeno-Tarraga,A.M., Parkhill,J., Flynn,S., O'Sullivan,G.C.,
               Collins,J.K., Higgins,D.G., Shanahan,F., Fitzgerald,G.F., van
               Sinderen,D. and O'Toole,P.W.
     CONSRTM   Alimentary Pharmabiotic Centre, University College Cork
     TITLE     Direct Submission
     JOURNAL   Submitted (16-DEC-2005) Department of Microbiology, Alimentary
               Pharmabiotic Centre, University College Cork, College Road, Cork,
               Ireland
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000233.
               COMPLETENESS: full length.
               Source DNA is available from Eva McArdle at Alimentary Pharmabiotic
               Centre (e.mcardle@ucc.ie).

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
74540	76056	+	1517	90960990	LSL_RNA001	-	16S ribosomal RNA
76070	79029	+	2960	90960990	LSL_RNA002	-	23S ribosomal RNA
79274	79390	+	117	90960990	LSL_RNA003	-	5S ribosomal RNA
217778	219294	+	1517	90960990	LSL_RNA004	-	16S ribosomal RNA
219398	219472	+	75	90960990	LSL_RNA119	-	^{14 Ile tRNA}
219504	219576	+	73	90960990	LSL_RNA120	-	^{02 Ala tRNA}
219703	222482	+	2780	90960990	LSL_RNA007	-	23S ribosomal RNA
222727	222843	+	117	90960990	LSL_RNA008	-	5S ribosomal RNA
222849	222921	+	73	90960990	LSL_RNA009	-	^{13 Val tRNA}
222925	222997	+	73	90960990	LSL_RNA010	-	^{10 Lys tRNA}
223013	223098	+	86	90960990	LSL_RNA011	-	^{15 Leu tRNA}
223107	223179	+	73	90960990	LSL_RNA012	-	^{12 Thr tRNA}
223184	223255	+	72	90960990	LSL_RNA013	-	^{01 Gly tRNA}
223265	223350	+	86	90960990	LSL_RNA014	-	^{15 Leu tRNA}
223359	223432	+	74	90960990	LSL_RNA015	-	^{11 Arg tRNA}
223480	223553	+	74	90960990	LSL_RNA016	-	^{11 Arg tRNA}
223558	223631	+	74	90960990	LSL_RNA017	-	^{03 Pro tRNA}
231540	231613	+	74	90960990	LSL_RNA018	-	^{03 Pro tRNA}
268098	268170	-	73	90960990	LSL_RNA019	-	^{12 Thr tRNA}
434853	436380	+	1528	90960990	LSL_RNA021	-	16S ribosomal RNA
436484	436558	+	75	90960990	LSL_RNA121	-	^{14 Ile tRNA}
436590	436662	+	73	90960990	LSL_RNA122	-	^{02 Ala tRNA}
436789	439568	+	2780	90960990	LSL_RNA025	-	23S ribosomal RNA
439813	439929	+	117	90960990	LSL_RNA108	-	5S ribosomal RNA
439935	440007	+	73	90960990	LSL_RNA123	-	^{07 Asn tRNA}
440022	440111	+	90	90960990	LSL_RNA030	-	^{08 Ser tRNA}
440126	440200	+	75	90960990	LSL_RNA124	-	^{04 Glu tRNA}
440203	440275	+	73	90960990	LSL_RNA032	-	^{13 Val tRNA}
440285	440357	+	73	90960990	LSL_RNA125	-	^{06 Asp tRNA}
440383	440458	+	76	90960990	LSL_RNA126	-	^{17 Phe tRNA}
440463	440545	+	83	90960990	LSL_RNA035	-	^{18 Tyr tRNA}
440558	440631	+	74	90960990	LSL_RNA036	-	^{20 Trp tRNA}
440638	440710	+	73	90960990	LSL_RNA037	-	^{09 His tRNA}
440722	440793	+	72	90960990	LSL_RNA038	-	^{05 Gln tRNA}
440803	440873	+	71	90960990	LSL_RNA039	-	^{19 Cys tRNA}
440904	440988	+	85	90960990	LSL_RNA040	-	^{15 Leu tRNA}
480393	481909	+	1517	90960990	LSL_RNA041	-	16S ribosomal RNA
481923	484882	+	2960	90960990	LSL_RNA042	-	23S ribosomal RNA
485127	485243	+	117	90960990	LSL_RNA044	-	5S ribosomal RNA
485249	485321	+	73	90960990	LSL_RNA045	-	^{13 Val tRNA}
485325	485397	+	73	90960990	LSL_RNA046	-	^{10 Lys tRNA}
485463	485535	+	73	90960990	LSL_RNA047	-	^{12 Thr tRNA}
485540	485611	+	72	90960990	LSL_RNA048	-	^{01 Gly tRNA}
485624	485709	+	86	90960990	LSL_RNA049	-	^{15 Leu tRNA}
485718	485791	+	74	90960990	LSL_RNA050	-	^{11 Arg tRNA}
485798	485871	+	74	90960990	LSL_RNA051	-	^{03 Pro tRNA}
485896	485969	+	74	90960990	LSL_RNA052	-	^{16 Met tRNA}
485986	486059	+	74	90960990	LSL_RNA053	-	^{16 Met tRNA}
486100	486189	+	90	90960990	LSL_RNA054	-	^{08 Ser tRNA}
486200	486273	+	74	90960990	LSL_RNA055	-	^{16 Met tRNA}
486278	486350	+	73	90960990	LSL_RNA056	-	^{06 Asp tRNA}
486360	486432	+	73	90960990	LSL_RNA057	-	^{17 Phe tRNA}
486452	486522	+	71	90960990	LSL_RNA058	-	^{01 Gly tRNA}
486531	486604	+	74	90960990	LSL_RNA059	-	^{14 Ile tRNA}
486608	486695	+	88	90960990	LSL_RNA060	-	^{08 Ser tRNA}
486700	486771	+	72	90960990	LSL_RNA061	-	^{04 Glu tRNA}
486794	486867	+	74	90960990	LSL_RNA062	-	^{16 Met tRNA}
486872	486944	+	73	90960990	LSL_RNA063	-	^{06 Asp tRNA}
497858	497941	-	84	90960990	LSL_RNA064	-	^{15 Leu tRNA}
567245	567318	-	74	90960990	LSL_RNA065	-	^{11 Arg tRNA}
624842	624914	+	73	90960990	LSL_RNA066	-	^{05 Gln tRNA}
723535	723605	-	71	90960990	LSL_RNA067	-	^{01 Gly tRNA}
797253	797323	+	71	90960990	LSL_RNA127	-	Xaa tRNA
825965	826052	-	88	90960990	LSL_RNA068	-	^{08 Ser tRNA}
956549	956619	-	71	90960990	LSL_RNA069	-	^{01 Gly tRNA}
1130195	1130267	-	73	90960990	LSL_RNA070	-	^{04 Glu tRNA}
1203000	1203071	-	72	90960990	LSL_RNA071	-	Xaa tRNA
1287765	1287850	-	86	90960990	LSL_RNA072	-	^{15 Leu tRNA}
1295428	1295499	-	72	90960990	LSL_RNA073	-	^{05 Gln tRNA}
1295503	1295588	-	86	90960990	LSL_RNA074	-	^{18 Tyr tRNA}
1297458	1297783	-	326	90960990	LSL_RNA075	-	5S ribosomal RNA
1297819	1300778	-	2960	90960990	LSL_RNA076	-	23S ribosomal RNA
1300792	1302308	-	1517	90960990	LSL_RNA077	-	16S ribosomal RNA
1326134	1326207	-	74	90960990	LSL_RNA078	-	^{11 Arg tRNA}
1406882	1406954	-	73	90960990	LSL_RNA079	-	^{12 Thr tRNA}
1406970	1407041	-	72	90960990	LSL_RNA080	-	^{04 Glu tRNA}
1407046	1407118	-	73	90960990	LSL_RNA081	-	^{07 Asn tRNA}
1407124	1407240	-	117	90960990	LSL_RNA082	-	5S ribosomal RNA
1407481	1410440	-	2960	90960990	LSL_RNA083	-	23S ribosomal RNA
1410454	1411970	-	1517	90960990	LSL_RNA084	-	16S ribosomal RNA
1754142	1754217	+	76	90960990	LSL_RNA085	-	^{10 Lys tRNA}
1763092	1763167	+	76	90960990	LSL_RNA086	-	^{10 Lys tRNA}
1812695	1812782	-	88	90960990	LSL_RNA087	-	^{15 Leu tRNA}
1812813	1812883	-	71	90960990	LSL_RNA088	-	^{19 Cys tRNA}
1812908	1812979	-	72	90960990	LSL_RNA089	-	^{05 Gln tRNA}
1812990	1813062	-	73	90960990	LSL_RNA090	-	^{09 His tRNA}
1813069	1813142	-	74	90960990	LSL_RNA091	-	^{20 Trp tRNA}
1813155	1813237	-	83	90960990	LSL_RNA092	-	^{18 Tyr tRNA}
1813242	1813317	-	76	90960990	LSL_RNA128	-	^{17 Phe tRNA}
1813343	1813415	-	73	90960990	LSL_RNA129	-	^{06 Asp tRNA}
1813425	1813497	-	73	90960990	LSL_RNA095	-	^{13 Val tRNA}
1813500	1813574	-	75	90960990	LSL_RNA130	-	^{04 Glu tRNA}
1813589	1813678	-	90	90960990	LSL_RNA097	-	^{08 Ser tRNA}
1813693	1813765	-	73	90960990	LSL_RNA131	-	^{07 Asn tRNA}
1813771	1813887	-	117	90960990	LSL_RNA099	-	5S ribosomal RNA
1814132	1816911	-	2780	90960990	LSL_RNA100	-	23S ribosomal RNA
1817038	1817110	-	73	90960990	LSL_RNA132	-	^{02 Ala tRNA}
1817142	1817216	-	75	90960990	LSL_RNA133	-	^{14 Ile tRNA}
1817320	1818824	-	1505	90960990	LSL_RNA103	-	16S ribosomal RNA