Геном прокариот/Материалы:NC 007952
(перенаправлено с «Материалы:NC 007952»)
 |
Базовый уровень статей |
 |
LOCUS NC_007952 3363523 bp DNA circular BCT 12-DEC-2006
DEFINITION Burkholderia xenovorans LB400 chromosome 2, complete sequence.
ACCESSION NC_007952
VERSION NC_007952.1 GI:91777110
KEYWORDS .
SOURCE Burkholderia xenovorans LB400
ORGANISM Burkholderia xenovorans LB400
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Burkholderiaceae; Burkholderia.
REFERENCE 1 (bases 1 to 3363523)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Kyrpides,N., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromosome 2 of Burkholderia xenovorans LB400
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3363523)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (11-APR-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3363523)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Kyrpides,N., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (13-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000271.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2351477
Source DNA and bacteria available from Jim Tiedje
(tiedjej@pilot.msu.edu)
Contacts: Jim Tiedje (tiedjej@pilot.msu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 539551 | 541040 | + | 1490 | 91777110 | Bxe_BR0001 | - | 16S ribosomal RNA |
| 541113 | 541189 | + | 77 | 91777110 | Bxe_BR0002 | - | 14 Ile tRNA |
| 541271 | 541346 | + | 76 | 91777110 | Bxe_BR0003 | - | 02 Ala tRNA |
| 541641 | 544522 | + | 2882 | 91777110 | Bxe_BR0004 | - | 23S ribosomal RNA |
| 544698 | 544811 | + | 114 | 91777110 | Bxe_BR0005 | - | 5S ribosomal RNA |
| 554750 | 554826 | + | 77 | 91777110 | Bxe_BR0006 | - | 13 Val tRNA |
| 570311 | 570406 | + | 96 | 91777110 | Bxe_BR0086 | - | Sec tRNA |
| 1300717 | 1302206 | + | 1490 | 91777110 | Bxe_BR0007 | - | 16S ribosomal RNA |
| 1302278 | 1302354 | + | 77 | 91777110 | Bxe_BR0008 | - | 14 Ile tRNA |
| 1302436 | 1302511 | + | 76 | 91777110 | Bxe_BR0009 | - | 02 Ala tRNA |
| 1302806 | 1305687 | + | 2882 | 91777110 | Bxe_BR0010 | - | 23S ribosomal RNA |
| 1305862 | 1305975 | + | 114 | 91777110 | Bxe_BR0011 | - | 5S ribosomal RNA |
| 1556131 | 1557620 | + | 1490 | 91777110 | Bxe_BR0012 | - | 16S ribosomal RNA |
| 1557693 | 1557769 | + | 77 | 91777110 | Bxe_BR0013 | - | 14 Ile tRNA |
| 1557851 | 1557926 | + | 76 | 91777110 | Bxe_BR0014 | - | 02 Ala tRNA |
| 1558221 | 1561102 | + | 2882 | 91777110 | Bxe_BR0015 | - | 23S ribosomal RNA |
| 1561278 | 1561391 | + | 114 | 91777110 | Bxe_BR0016 | - | 5S ribosomal RNA |