Геном прокариот/Материалы:NC 007963

	Базовый уровень статей Выделить только проверенную информацию
	Создать черновик

Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007963            3696649 bp    DNA     circular BCT 17-APR-2006
   DEFINITION  Chromohalobacter salexigens DSM 3043, complete genome.
   ACCESSION   NC_007963
   VERSION     NC_007963.1  GI:92112136
   KEYWORDS    .
   SOURCE      Chromohalobacter salexigens DSM 3043
     ORGANISM  Chromohalobacter salexigens DSM 3043
               Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales;
               Halomonadaceae; Chromohalobacter.
   REFERENCE   1  (bases 1 to 3696649)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Saunders,E.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromohalobacter salexigens DSM 3043
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3696649)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (17-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3696649)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Saunders,E.,
               Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (15-MAR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000285.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634505
               Source DNA available from Laszlo Csonka
               (lcsonka@bilbo.bio.purdue.edu)
               Bacteria available from DSMZ: DSM 3043
               Contacts:
                         Laszlo Csonka (lcsonka@bilbo.bio.purdue.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
454940	456413	+	1474	92112136	Csal_R0001	-	16S ribosomal RNA
456548	456624	+	77	92112136	Csal_R0002	-	^{14 Ile tRNA}
456732	456807	+	76	92112136	Csal_R0003	-	^{02 Ala tRNA}
456987	459883	+	2897	92112136	Csal_R0004	-	23S ribosomal RNA
459986	460101	+	116	92112136	Csal_R0005	-	5S ribosomal RNA
462206	462289	+	84	92112136	Csal_R0006	-	^{18 Tyr tRNA}
462339	462412	+	74	92112136	Csal_R0007	-	^{01 Gly tRNA}
462421	462495	+	75	92112136	Csal_R0008	-	^{12 Thr tRNA}
462617	462692	+	76	92112136	Csal_R0009	-	^{20 Trp tRNA}
522085	522161	-	77	92112136	Csal_R0010	-	^{03 Pro tRNA}
557343	558816	+	1474	92112136	Csal_R0011	-	16S ribosomal RNA
558957	559033	+	77	92112136	Csal_R0012	-	^{14 Ile tRNA}
559251	559326	+	76	92112136	Csal_R0013	-	^{02 Ala tRNA}
559506	562402	+	2897	92112136	Csal_R0014	-	23S ribosomal RNA
562505	562620	+	116	92112136	Csal_R0015	-	5S ribosomal RNA
580057	580132	+	76	92112136	Csal_R0016	-	^{17 Phe tRNA}
580139	580213	+	75	92112136	Csal_R0017	-	^{05 Gln tRNA}
580235	580310	+	76	92112136	Csal_R0018	-	^{12 Thr tRNA}
584792	584867	+	76	92112136	Csal_R0019	-	^{12 Thr tRNA}
705419	705511	+	93	92112136	Csal_R0020	-	^{08 Ser tRNA}
705541	705617	+	77	92112136	Csal_R0021	-	^{11 Arg tRNA}
705704	705780	+	77	92112136	Csal_R0022	-	^{11 Arg tRNA}
951832	951906	+	75	92112136	Csal_R0023	-	^{10 Lys tRNA}
951949	952023	+	75	92112136	Csal_R0024	-	^{10 Lys tRNA}
952058	952132	+	75	92112136	Csal_R0025	-	^{10 Lys tRNA}
985955	986030	+	76	92112136	Csal_R0026	-	^{13 Val tRNA}
986081	986157	+	77	92112136	Csal_R0027	-	^{06 Asp tRNA}
986206	986282	+	77	92112136	Csal_R0028	-	^{06 Asp tRNA}
986339	986415	+	77	92112136	Csal_R0029	-	^{13 Val tRNA}
986438	986514	+	77	92112136	Csal_R0030	-	^{06 Asp tRNA}
997605	997691	-	87	92112136	Csal_R0031	-	^{15 Leu tRNA}
997716	997802	-	87	92112136	Csal_R0032	-	^{15 Leu tRNA}
997838	997924	-	87	92112136	Csal_R0033	-	^{15 Leu tRNA}
1078902	1079036	-	135	92112136	Csal_R0034	-
1196492	1196568	+	77	92112136	Csal_R0035	-	^{16 Met tRNA}
1252992	1253128	+	137	92112136	Csal_R0036	-
1386433	1386508	+	76	92112136	Csal_R0037	-	^{02 Ala tRNA}
1386525	1386600	+	76	92112136	Csal_R0038	-	^{04 Glu tRNA}
1431797	1431872	-	76	92112136	Csal_R0039	-	^{01 Gly tRNA}
1548665	1548740	+	76	92112136	Csal_R0040	-	^{04 Glu tRNA}
1548764	1548838	+	75	92112136	Csal_R0041	-	^{01 Gly tRNA}
1549001	1549076	+	76	92112136	Csal_R0042	-	^{04 Glu tRNA}
1549118	1549192	+	75	92112136	Csal_R0043	-	^{01 Gly tRNA}
1549215	1549290	+	76	92112136	Csal_R0044	-	^{04 Glu tRNA}
1553348	1553435	+	88	92112136	Csal_R0045	-	^{08 Ser tRNA}
1651738	1651855	+	118	92112136	Csal_R0046	-	SRP RNA; RNA component of signal recognition particle
1704632	1704863	-	232	92112136	Csal_R0047	-
1726909	1726985	+	77	92112136	Csal_R0048	-	^{16 Met tRNA}
1727230	1727305	+	76	92112136	Csal_R0049	-	^{07 Asn tRNA}
1727328	1727403	+	76	92112136	Csal_R0050	-	^{07 Asn tRNA}
1727432	1727507	+	76	92112136	Csal_R0051	-	^{07 Asn tRNA}
1733361	1733437	-	77	92112136	Csal_R0052	-	^{16 Met tRNA}
1737126	1737201	-	76	92112136	Csal_R0053	-	^{05 Gln tRNA}
2039871	2039947	-	77	92112136	Csal_R0054	-	^{03 Pro tRNA}
2078081	2079554	+	1474	92112136	Csal_R0055	-	16S ribosomal RNA
2079689	2079765	+	77	92112136	Csal_R0056	-	^{14 Ile tRNA}
2079887	2079962	+	76	92112136	Csal_R0057	-	^{02 Ala tRNA}
2080142	2083038	+	2897	92112136	Csal_R0058	-	23S ribosomal RNA
2083141	2083256	+	116	92112136	Csal_R0059	-	5S ribosomal RNA
2185514	2185603	+	90	92112136	Csal_R0060	-	^{08 Ser tRNA}
2185723	2185813	+	91	92112136	Csal_R0061	-	^{08 Ser tRNA}
2189682	2189788	+	107	92112136	Csal_R0062	-
2311526	2311600	-	75	92112136	Csal_R0063	-	^{09 His tRNA}
2311634	2311708	-	75	92112136	Csal_R0064	-	^{09 His tRNA}
2311759	2311835	-	77	92112136	Csal_R0065	-	^{11 Arg tRNA}
2311895	2311971	-	77	92112136	Csal_R0066	-	^{03 Pro tRNA}
2371927	2372003	-	77	92112136	Csal_R0067	-	^{13 Val tRNA}
2372065	2372141	-	77	92112136	Csal_R0068	-	^{13 Val tRNA}
2399776	2399851	-	76	92112136	Csal_R0069	-	^{02 Ala tRNA}
2403437	2403511	+	75	92112136	Csal_R0070	-	^{01 Gly tRNA}
2403586	2403659	+	74	92112136	Csal_R0071	-	^{19 Cys tRNA}
2403695	2403781	+	87	92112136	Csal_R0072	-	^{15 Leu tRNA}
2475702	2476000	-	299	92112136	Csal_R0073	-	RNA component of RNaseP
2584594	2584678	-	85	92112136	Csal_R0074	-	^{15 Leu tRNA}
2715800	2715915	-	116	92112136	Csal_R0075	-	5S ribosomal RNA
2716018	2718915	-	2898	92112136	Csal_R0076	-	23S ribosomal RNA
2719183	2719258	-	76	92112136	Csal_R0077	-	^{02 Ala tRNA}
2719380	2719456	-	77	92112136	Csal_R0078	-	^{14 Ile tRNA}
2719591	2721064	-	1474	92112136	Csal_R0079	-	16S ribosomal RNA
2875011	2875087	+	77	92112136	Csal_R0080	-	^{11 Arg tRNA}
3160950	3161036	-	87	92112136	Csal_R0081	-	^{15 Leu tRNA}
3375098	3375174	+	77	92112136	Csal_R0082	-	^{16 Met tRNA}
3392848	3392963	-	116	92112136	Csal_R0083	-	5S ribosomal RNA
3393066	3395962	-	2897	92112136	Csal_R0084	-	23S ribosomal RNA
3396214	3396289	-	76	92112136	Csal_R0085	-	^{02 Ala tRNA}
3396453	3396529	-	77	92112136	Csal_R0086	-	^{14 Ile tRNA}
3396670	3398143	-	1474	92112136	Csal_R0087	-	16S ribosomal RNA
3427948	3428024	-	77	92112136	Csal_R0088	-	^{16 Met tRNA}
3428132	3428218	-	87	92112136	Csal_R0089	-	^{15 Leu tRNA}
3553307	3553383	-	77	92112136	Csal_R0090	-	^{11 Arg tRNA}