Геном прокариот/Материалы:NC 002662

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_002662            2365589 bp    DNA     circular BCT 07-JUN-2007
   DEFINITION  Lactococcus lactis subsp. lactis Il1403, complete genome.
   ACCESSION   NC_002662
   VERSION     NC_002662.1  GI:15671982
   KEYWORDS    .
   SOURCE      Lactococcus lactis subsp. lactis Il1403
     ORGANISM  Lactococcus lactis subsp. lactis Il1403
               Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
               Lactococcus.
   REFERENCE   1  (bases 1 to 2365589)
     AUTHORS   Bolotin,A., Wincker,P., Mauger,S., Jaillon,O., Malarme,K.,
               Weissenbach,J., Ehrlich,S.D. and Sorokin,A.
     TITLE     The complete genome sequence of the lactic acid bacterium
               Lactococcus lactis ssp. lactis IL1403
     JOURNAL   Genome Res. 11 (5), 731-753 (2001)
      PUBMED   11337471
   REFERENCE   2  (bases 1 to 2365589)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (19-SEP-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2365589)
     AUTHORS   Bolotin,A., Wincker,P., Mauger,S., Jaillon,O., Malarme,K.,
               Weissenbach,J., Ehrlich,S.D. and Sorokin,A.
     TITLE     Direct Submission
     JOURNAL   Submitted (09-JAN-2001) INRA, Genetique Microbienne, Domaine de
               Vilvert, Jouy en Josas 78352, France
   COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
               reference sequence was derived from AE005176.
               regions of prohages are represented by misc_features. Complete
               genome of 5 L.lactis prophages can be found  as separate proviral
               genome records:   34907..49847 NC_002669 - Bacteriophage bIL310
               447143..484092 NC_002668 - Bacteriophage bIL309 502595..517773
               NC_002671 - Bacteriophage bIL312 1036549..1072086 NC_002666 -
               Bacteriophage bIL285 1415283..1457116  NC_002667 - Bacteriophage
               bIL286.
               COMPLETENESS: full length.
               REFSEQ gene predictions performed by GeneMark 2.4/GeneMark.hmm 2.0
               with comparison to original submitter provided annotation. tRNA
               predictions performed by tRNAscan-SE v.1.23. rRNA predictions
               performed by BLAST.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
28196	28267	+	72	15671982	L200081	-	^{04 Glu tRNA}
28273	28362	+	90	15671982	L200082	-	^{08 Ser tRNA}
28373	28446	+	74	15671982	L200083	-	^{16 Met tRNA}
28451	28523	+	73	15671982	L200084	-	^{17 Phe tRNA}
28535	28605	+	71	15671982	L200085	-	^{01 Gly tRNA}
28620	28693	+	74	15671982	L200086	-	^{14 Ile tRNA}
28818	28891	+	74	15671982	L200087	-	^{07 Asn tRNA}
56361	56433	+	73	15671982	L200088	-	^{10 Lys tRNA}
123360	123448	-	89	15671982	L200141	-	^{15 Leu tRNA}
126511	126597	-	87	15671982	L200140	-	^{08 Ser tRNA}
155240	155312	-	73	15671982	L200139	-	^{12 Thr tRNA}
256042	256130	-	89	15671982	L200138	-	^{15 Leu tRNA}
275512	275599	-	88	15671982	L200137	-	^{08 Ser tRNA}
282716	282789	+	74	15671982	L200089	-	^{11 Arg tRNA}
283094	283167	+	74	15671982	L200090	-	^{03 Pro tRNA}
424317	424387	+	71	15671982	L200091	-	^{19 Cys tRNA}
447083	447156	+	74	15671982	L200092	-	^{11 Arg tRNA}
517530	517603	+	74	15671982	L200093	-	^{16 Met tRNA}
537561	539108	+	1548	15671982	L200142	-	16S ribosomal RNA
539202	539274	+	73	15671982	L200094	-	^{02 Ala tRNA}
539413	542313	+	2901	15671982	L200143	-	23S ribosomal RNA
542397	542512	+	116	15671982	L200144	-	5S ribosomal RNA
542516	542588	+	73	15671982	L200095	-	^{13 Val tRNA}
542618	542690	+	73	15671982	L200096	-	^{06 Asp tRNA}
542708	542780	+	73	15671982	L200097	-	^{10 Lys tRNA}
542789	542870	+	82	15671982	L200098	-	^{15 Leu tRNA}
542883	542955	+	73	15671982	L200099	-	^{12 Thr tRNA}
542981	543052	+	72	15671982	L200100	-	^{01 Gly tRNA}
543091	543164	+	74	15671982	L200101	-	^{11 Arg tRNA}
543170	543243	+	74	15671982	L200102	-	^{03 Pro tRNA}
543281	543354	+	74	15671982	L200103	-	^{16 Met tRNA}
543367	543440	+	74	15671982	L200104	-	^{16 Met tRNA}
543448	543520	+	73	15671982	L200105	-	^{17 Phe tRNA}
543531	543601	+	71	15671982	L200106	-	^{01 Gly tRNA}
543628	543701	+	74	15671982	L200107	-	^{14 Ile tRNA}
543744	543831	+	88	15671982	L200108	-	^{08 Ser tRNA}
617800	617871	+	72	15671982	L200109	-	^{11 Arg tRNA}
618494	618569	+	76	15671982	L200110	-	^{10 Lys tRNA}
1412349	1412438	-	90	15671982	L200136	-	^{08 Ser tRNA}
1690708	1690779	-	72	15671982	L200135	-	^{05 Gln tRNA}
1711201	1711273	+	73	15671982	L200111	-	^{11 Arg tRNA}
1980491	1980576	-	86	15671982	L200134	-	^{15 Leu tRNA}
1980612	1980683	-	72	15671982	L200133	-	^{01 Gly tRNA}
1980709	1980781	-	73	15671982	L200132	-	^{12 Thr tRNA}
1980794	1980875	-	82	15671982	L200131	-	^{15 Leu tRNA}
1980884	1980956	-	73	15671982	L200130	-	^{10 Lys tRNA}
1980974	1981046	-	73	15671982	L200129	-	^{06 Asp tRNA}
1981076	1981148	-	73	15671982	L200128	-	^{13 Val tRNA}
1981152	1981267	-	116	15671982	L200145	-	5S ribosomal RNA
1981351	1984250	-	2900	15671982	L200146	-	23S ribosomal RNA
1984389	1984461	-	73	15671982	L200127	-	^{02 Ala tRNA}
1984555	1986102	-	1548	15671982	L200147	-	16S ribosomal RNA
2012538	2012621	-	84	15671982	L200126	-	^{15 Leu tRNA}
2151430	2151502	-	73	15671982	L200125	-	^{12 Thr tRNA}
2218214	2218329	-	116	15671982	L200148	-	5S ribosomal RNA
2218413	2221311	-	2899	15671982	L200149	-	23S ribosomal RNA
2221450	2221522	-	73	15671982	L200124	-	^{02 Ala tRNA}
2221616	2223163	-	1548	15671982	L200150	-	16S ribosomal RNA
2260725	2260840	-	116	15671982	L200151	-	5S ribosomal RNA
2260924	2263823	-	2900	15671982	L200152	-	23S ribosomal RNA
2263962	2264034	-	73	15671982	L200123	-	^{02 Ala tRNA}
2264128	2265675	-	1548	15671982	L200153	-	16S ribosomal RNA
2299369	2299451	-	83	15671982	L200122	-	^{15 Leu tRNA}
2340428	2340511	-	84	15671982	L200121	-	^{15 Leu tRNA}
2340524	2340595	-	72	15671982	L200120	-	^{05 Gln tRNA}
2340603	2340675	-	73	15671982	L200119	-	^{09 His tRNA}
2340686	2340756	-	71	15671982	L200118	-	^{20 Trp tRNA}
2340763	2340843	-	81	15671982	L200117	-	^{18 Tyr tRNA}
2340879	2340951	-	73	15671982	L200116	-	^{13 Val tRNA}
2340955	2341070	-	116	15671982	L200154	-	5S ribosomal RNA
2341154	2344054	-	2901	15671982	L200155	-	23S ribosomal RNA
2344193	2344265	-	73	15671982	L200115	-	^{02 Ala tRNA}
2344359	2345906	-	1548	15671982	L200156	-	16S ribosomal RNA
2359943	2360016	-	74	15671982	L200114	-	^{07 Asn tRNA}
2360053	2360124	-	72	15671982	L200113	-	^{04 Glu tRNA}
2360134	2360249	-	116	15671982	L200157	-	5S ribosomal RNA
2360333	2363233	-	2901	15671982	L200158	-	23S ribosomal RNA
2363372	2363444	-	73	15671982	L200112	-	^{02 Ala tRNA}
2363538	2365085	-	1548	15671982	L200159	-	16S ribosomal RNA