Геном прокариот/Материалы:NC 002939

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_002939            3814139 bp    DNA     circular BCT 18-JAN-2006
   DEFINITION  Geobacter sulfurreducens PCA, complete genome.
   ACCESSION   NC_002939
   VERSION     NC_002939.4  GI:39995111
   KEYWORDS    .
   SOURCE      Geobacter sulfurreducens PCA
     ORGANISM  Geobacter sulfurreducens PCA
               Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales;
               Geobacteraceae; Geobacter.
   REFERENCE   1  (bases 1 to 3814139)
     AUTHORS   Methe,B.A., Nelson,K.E., Eisen,J.A., Paulsen,I.T., Nelson,W.,
               Heidelberg,J.F., Wu,D., Wu,M., Ward,N., Beanan,M.J., Dodson,R.J.,
               Madupu,R., Brinkac,L.M., Daugherty,S.C., DeBoy,R.T., Durkin,A.S.,
               Gwinn,M., Kolonay,J.F., Sullivan,S.A., Haft,D.H., Selengut,J.,
               Davidsen,T.M., Zafar,N., White,O., Tran,B., Romero,C.,
               Forberger,H.A., Weidman,J., Khouri,H., Feldblyum,T.V.,
               Utterback,T.R., Van Aken,S.E., Lovley,D.R. and Fraser,C.M.
     TITLE     Genome of Geobacter sulfurreducens: metal reduction in subsurface
               environments
     JOURNAL   Science 302 (5652), 1967-1969 (2003)
      PUBMED   14671304
   REFERENCE   2  (bases 1 to 3814139)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3814139)
     AUTHORS   Methe,B., Nelson,K.E., Eisen,J.A., Paulsen,I.T., Nelson,W.C.,
               Heidelberg,J.F., Wu,D., Wu,M., Ward,N., Beanan,M.J., Dodson,R.J.,
               Madupu,R., Brinkac,L.M., Daugherty,S.C., DeBoy,R.T., Durkin,A.S.,
               Gwinn,M.L., Kolonay,J.F., Sullivan,S.A., Haft,D.H., Selengut,J.,
               Davidsen,T.M., Zafar,N., White,O., Tran,B., Romero,C.,
               Forberger,H.A., Weidman,J.M., Khouri,H.M., Feldblyum,T.V.,
               Utterback,T.R., Van Aken,S.E., Lovley,D.R. and Fraser,C.M.
     TITLE     Direct Submission
     JOURNAL   Submitted (05-SEP-2003) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE017180.
               On Dec 17, 2003 this sequence version replaced gi:38154477.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
48681	48766	+	86	39995111	tRNA-Ser-1	-	^{08 Ser tRNA}
48786	48879	+	94	39995111	tRNA-Ser-2	-	^{08 Ser tRNA}
49426	49502	+	77	39995111	tRNA-Arg-1	-	^{11 Arg tRNA}
82025	82114	+	90	39995111	tRNA-Ser-3	-	^{08 Ser tRNA}
106424	106511	+	88	39995111	tRNA-Ser-4	-	^{08 Ser tRNA}
311488	311563	-	76	39995111	tRNA-Ala-1	-	^{02 Ala tRNA}
468913	468989	+	77	39995111	tRNA-Pro-1	-	^{03 Pro tRNA}
496027	496102	+	76	39995111	tRNA-Phe-1	-	^{17 Phe tRNA}
637706	637781	-	76	39995111	tRNA-Thr-1	-	^{12 Thr tRNA}
684698	686245	+	1548	39995111	Gs16SA	-	16S ribosomal RNA
686401	686477	+	77	39995111	tRNA-Ile-1	-	^{14 Ile tRNA}
686483	686558	+	76	39995111	tRNA-Ala-2	-	^{02 Ala tRNA}
686699	689656	+	2958	39995111	Gs23SA	-	23S ribosomal RNA
689766	689877	+	112	39995111	Gs5SA	-	5S ribosomal RNA
697860	697934	+	75	39995111	tRNA-Gln-1	-	^{05 Gln tRNA}
909735	909828	-	94	39995111	tRNA-SeC(p)-1	-	Sec tRNA
1224149	1225696	+	1548	39995111	Gs16SB	-	16S ribosomal RNA
1225852	1225928	+	77	39995111	tRNA-Ile-2	-	^{14 Ile tRNA}
1225934	1226009	+	76	39995111	tRNA-Ala-3	-	^{02 Ala tRNA}
1226150	1229107	+	2958	39995111	Gs23SB	-	23S ribosomal RNA
1229217	1229328	+	112	39995111	Gs5SB	-	5S ribosomal RNA
1468378	1468452	+	75	39995111	tRNA-Gly-1	-	^{01 Gly tRNA}
1555351	1555437	-	87	39995111	tRNA-Leu-1	-	^{15 Leu tRNA}
1603297	1603383	-	87	39995111	tRNA-Leu-2	-	^{15 Leu tRNA}
1603508	1603583	+	76	39995111	tRNA-Ala-4	-	^{02 Ala tRNA}
1662002	1662076	+	75	39995111	tRNA-Val-1	-	^{13 Val tRNA}
1669588	1669664	+	77	39995111	tRNA-Pro-2	-	^{03 Pro tRNA}
1672860	1672936	+	77	39995111	tRNA-Arg-2	-	^{11 Arg tRNA}
1728856	1728930	-	75	39995111	tRNA-Val-2	-	^{13 Val tRNA}
1781724	1781810	-	87	39995111	tRNA-Leu-3	-	^{15 Leu tRNA}
1874135	1874490	+	356	39995111	GstmRNA1	-	sRNA
1953582	1953658	-	77	39995111	tRNA-Asp-1	-	^{06 Asp tRNA}
1953718	1953793	-	76	39995111	tRNA-Val-3	-	^{13 Val tRNA}
1953805	1953881	-	77	39995111	tRNA-Asp-2	-	^{06 Asp tRNA}
1959741	1959823	-	83	39995111	tRNA-Leu-4	-	^{15 Leu tRNA}
1959886	1959962	-	77	39995111	tRNA-His-1	-	^{09 His tRNA}
1959988	1960064	-	77	39995111	tRNA-Arg-3	-	^{11 Arg tRNA}
1960070	1960147	-	78	39995111	tRNA-Pro-3	-	^{03 Pro tRNA}
1977219	1977295	-	77	39995111	tRNA-Met-1	-	^{16 Met tRNA}
1977348	1977424	-	77	39995111	tRNA-Met-2	-	^{16 Met tRNA}
1992689	1992763	-	75	39995111	tRNA-Cys-1	-	^{19 Cys tRNA}
2036671	2036745	-	75	39995111	tRNA-Glu-1	-	^{04 Glu tRNA}
2036816	2036890	-	75	39995111	tRNA-Gln-2	-	^{05 Gln tRNA}
2337350	2337416	-	67	39995111	tRNA-Ser-5	-	^{08 Ser tRNA}
2393643	2393717	-	75	39995111	tRNA-Gly-2	-	^{01 Gly tRNA}
2869803	2869889	-	87	39995111	tRNA-Leu-5	-	^{15 Leu tRNA}
2990873	2990949	+	77	39995111	tRNA-Arg-4	-	^{11 Arg tRNA}
3145533	3145609	-	77	39995111	tRNA-Trp-1	-	^{20 Trp tRNA}
3147107	3147182	-	76	39995111	tRNA-Thr-2	-	^{12 Thr tRNA}
3147195	3147271	-	77	39995111	tRNA-Gly-3	-	^{01 Gly tRNA}
3147382	3147467	-	86	39995111	tRNA-Tyr-1	-	^{18 Tyr tRNA}
3147495	3147570	-	76	39995111	tRNA-Thr-3	-	^{12 Thr tRNA}
3387878	3388192	-	315	39995111	GsrnpB1	-	sRNA
3391620	3391696	-	77	39995111	tRNA-Met-3	-	^{16 Met tRNA}
3633806	3633881	+	76	39995111	tRNA-Lys-1	-	^{10 Lys tRNA}
3633932	3634009	+	78	39995111	tRNA-Glu-2	-	^{04 Glu tRNA}
3725095	3725170	+	76	39995111	tRNA-Asn-1	-	^{07 Asn tRNA}