Геном прокариот/Материалы:NC 002967

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_002967            2843201 bp    DNA     circular BCT 26-JAN-2007
   DEFINITION  Treponema denticola ATCC 35405, complete genome.
   ACCESSION   NC_002967
   VERSION     NC_002967.9  GI:42516522
   KEYWORDS    .
   SOURCE      Treponema denticola ATCC 35405
     ORGANISM  Treponema denticola ATCC 35405
               Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.
   REFERENCE   1  (bases 1 to 2843201)
     AUTHORS   Seshadri,R., Myers,G.S., Tettelin,H., Eisen,J.A., Heidelberg,J.F.,
               Dodson,R.J., Davidsen,T.M., DeBoy,R.T., Fouts,D.E., Haft,D.H.,
               Selengut,J., Ren,Q., Brinkac,L.M., Madupu,R., Kolonay,J.,
               Durkin,S.A., Daugherty,S.C., Shetty,J., Shvartsbeyn,A.,
               Gebregeorgis,E., Geer,K., Tsegaye,G., Malek,J., Ayodeji,B.,
               Shatsman,S., McLeod,M.P., Smajs,D., Howell,J.K., Pal,S., Amin,A.,
               Vashisth,P., McNeill,T.Z., Xiang,Q., Sodergren,E., Baca,E.,
               Weinstock,G.M., Norris,S.J., Fraser,C.M. and Paulsen,I.T.
     TITLE     Comparison of the genome of the oral pathogen Treponema denticola
               with other spirochete genomes
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (15), 5646-5651 (2004)
      PUBMED   15064399
   REFERENCE   2  (bases 1 to 2843201)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2843201)
     AUTHORS   Seshadri,R., Myers,G.S., Tettelin,H., Eisen,J.A., Heidelberg,J.F.,
               Dodson,R.J., Davidsen,T.M., DeBoy,R.T., Fouts,D.E., Haft,D.H.,
               Selengut,J., Ren,Q., Brinkac,L.M., Madupu,R., Kolonay,J.F.,
               Durkin,A.S., Daugherty,S.C., Shetty,J., Shvartsbeyn,A.,
               Gebregeorgis,E., Geer,K., Tsegaye,G., Malek,J.A., Ayodeji,B.,
               Shatsman,S., McLeod,M.P., Majs,D., Howell,J.K., Pal,S., Amin,A.,
               Vashisth,P., McNeill,T.Z., Weinstock,G.M., Norris,S.J., Fraser,C.M.
               and Paulsen,I.T.
     TITLE     Direct Submission
     JOURNAL   Submitted (29-JAN-2004) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE017226.
               On Feb 10, 2004 this sequence version replaced gi:41584505.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
31732	31803	+	72	42516522	TDE_tRNA-Cys-1	-	^{19 Cys tRNA}
246212	246562	-	351	42516522	TDE_tmRNA	-	10Sa RNA
250688	250774	-	87	42516522	TDE_tRNA-Ser-1	-	^{08 Ser tRNA}
250822	250906	-	85	42516522	TDE_tRNA-Pseudo-1	-
250948	251021	-	74	42516522	TDE_tRNA-Arg-1	-	^{11 Arg tRNA}
251033	251119	-	87	42516522	TDE_tRNA-Pseudo-2	-
251146	251230	-	85	42516522	TDE_tRNA-Ser-2	-	^{08 Ser tRNA}
610211	611726	+	1516	42516522	TDE_16SA	-	16S ribosomal RNA
611869	611942	+	74	42516522	TDE_tRNA-Ala-1	-	^{02 Ala tRNA}
612128	615037	+	2910	42516522	TDE_23SA	-	23S ribosomal RNA
615208	615318	+	111	42516522	TDE_5SA	-	5S ribosomal RNA
684725	684797	+	73	42516522	TDE_tRNA-Ala-2	-	^{02 Ala tRNA}
884545	884626	+	82	42516522	TDE_tRNA-Leu-1	-	^{15 Leu tRNA}
1018212	1018287	-	76	42516522	TDE_tRNA-Asn-1	-	^{07 Asn tRNA}
1090480	1090567	+	88	42516522	TDE_tRNA-SeC(p)-1	-	Sec tRNA
1202619	1202691	-	73	42516522	TDE_tRNA-Met-1	-	^{16 Met tRNA}
1219839	1221354	+	1516	42516522	TDE_16SB	-	16S ribosomal RNA
1221484	1221557	+	74	42516522	TDE_tRNA-Ile-1	-	^{14 Ile tRNA}
1221739	1224648	+	2910	42516522	TDE_23SB	-	23S ribosomal RNA
1224812	1224922	+	111	42516522	TDE_5SB	-	5S ribosomal RNA
1376314	1376386	+	73	42516522	TDE_tRNA-Gln-1	-	^{05 Gln tRNA}
1388132	1388457	+	326	42516522	TDE_rnpB	-	RNase P RNA component
1395627	1395699	-	73	42516522	TDE_tRNA-Met-2	-	^{16 Met tRNA}
1551533	1551604	+	72	42516522	TDE_tRNA-Glu-1	-	^{04 Glu tRNA}
1584328	1584402	+	75	42516522	TDE_tRNA-Thr-1	-	^{12 Thr tRNA}
1584409	1584490	+	82	42516522	TDE_tRNA-Tyr-1	-	^{18 Tyr tRNA}
1680012	1680084	-	73	42516522	TDE_tRNA-Thr-2	-	^{12 Thr tRNA}
1724782	1724864	+	83	42516522	TDE_tRNA-Leu-2	-	^{15 Leu tRNA}
1724894	1724965	+	72	42516522	TDE_tRNA-Gly-1	-	^{01 Gly tRNA}
1789641	1789713	+	73	42516522	TDE_tRNA-Phe-1	-	^{17 Phe tRNA}
1795537	1795619	+	83	42516522	TDE_tRNA-Leu-3	-	^{15 Leu tRNA}
1797908	1797981	-	74	42516522	TDE_tRNA-Pro-1	-	^{03 Pro tRNA}
1807238	1807311	+	74	42516522	TDE_tRNA-Val-1	-	^{13 Val tRNA}
1943843	1943914	+	72	42516522	TDE_tRNA-Gly-2	-	^{01 Gly tRNA}
1949078	1949151	-	74	42516522	TDE_tRNA-Arg-2	-	^{11 Arg tRNA}
1960253	1960326	-	74	42516522	TDE_tRNA-Arg-3	-	^{11 Arg tRNA}
1960359	1960430	-	72	42516522	TDE_tRNA-His-1	-	^{09 His tRNA}
2058210	2058296	+	87	42516522	TDE_tRNA-Leu-4	-	^{15 Leu tRNA}
2079695	2079768	+	74	42516522	TDE_tRNA-Val-2	-	^{13 Val tRNA}
2346434	2346506	+	73	42516522	TDE_tRNA-Pro-2	-	^{03 Pro tRNA}
2346520	2346596	+	77	42516522	TDE_tRNA-Arg-4	-	^{11 Arg tRNA}
2354124	2354197	+	74	42516522	TDE_tRNA-Met-3	-	^{16 Met tRNA}
2456096	2456168	-	73	42516522	TDE_tRNA-Trp-1	-	^{20 Trp tRNA}
2456424	2456496	-	73	42516522	TDE_tRNA-Thr-3	-	^{12 Thr tRNA}
2555330	2555402	-	73	42516522	TDE_tRNA-Lys-1	-	^{10 Lys tRNA}
2616226	2616297	-	72	42516522	TDE_tRNA-Pro-3	-	^{03 Pro tRNA}
2616352	2616426	-	75	42516522	TDE_tRNA-Asp-1	-	^{06 Asp tRNA}
2623417	2623499	-	83	42516522	TDE_tRNA-Leu-5	-	^{15 Leu tRNA}
2682138	2682210	-	73	42516522	TDE_tRNA-Lys-2	-	^{10 Lys tRNA}
2807414	2807486	+	73	42516522	TDE_tRNA-Ala-3	-	^{02 Ala tRNA}
2836733	2836803	+	71	42516522	TDE_tRNA-Gln-2	-	^{05 Gln tRNA}
2836822	2836893	+	72	42516522	TDE_tRNA-Glu-2	-	^{04 Glu tRNA}