Геном прокариот/Материалы:NC 005085

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_005085            4751080 bp    DNA     circular BCT 22-JUN-2007
   DEFINITION  Chromobacterium violaceum ATCC 12472, complete genome.
   ACCESSION   NC_005085
   VERSION     NC_005085.1  GI:34495455
   KEYWORDS    .
   SOURCE      Chromobacterium violaceum ATCC 12472
     ORGANISM  Chromobacterium violaceum ATCC 12472
               Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales;
               Neisseriaceae; Chromobacterium.
   REFERENCE   1  (bases 1 to 4751080)
     AUTHORS   Vasconcelos,A.T.R., de Almeida,D.F., Almeida,F.C., de
               Almeida,L.G.P., de Almeida,R., Goncalves,J.A.A., Andrade,E.M.,
               Antonio,R.V., Araripe,J., de Araujo,M.F.F., Filho,S.A., Azevedo,V.,
               Batista,A.J., Bataus,L.A.M., Batista,J.S., Belo,A., vander Berg,C.,
               Blamey,J., Bogo,M., Bonato,S., Bordignon,J., Brito,C.A.,
               Brocchi,M., Burity,H.A., Camargo,A.A., Cardoso,D.D.P.,
               Carneiro,N.P., Carraro,D.M., Carvalho,C.M.B., Cascardo,J.C.M.,
               Cavada,B.S., Chueire,L.M.O., Pasa,T.B.C., Duran,N., Fagundes,N.,
               Falcao,C.L., Fantinatti,F., Farias,I.P., Felipe,M.S.S.,
               Ferrari,L.P., Ferro,J.A., Ferro,M.I.T., Franco,G.R.,
               Freitas,N.S.A., Furlan,L.R., Gazzinelli,R.T., Gomes,E.A.,
               Goncalves,P.R., Grangeiro,T.B., Grattapaglia,D., Grisard,E.C.,
               Guimaraes,C.T., Hanna,E.S., Hungria,M., Jardim,S.N., Laurino,J.,
               Leoi,L.C.T., Fassarella,L., Lima,A., Loureiro,M.F., Lyra,M.C.P.,
               Macedo,M., Madeira,H.M.F., Manfio,G.P., Maranhao,A.Q.,
               Martins,W.S., di Mauro,S.M.Z., de Medeiros,S.R.B., Meissner,R.D.V.,
               Menck,C.F.M., Moreira,M.A.M., Nascimento,F.F., Nicolas,M.F.,
               Oliveira,J.G., Oliveira,S.C., Paixao,R.F.C., Parente,J.A.,
               Pedrosa,F.O., Pena,S.J.D., Perreira,J.O., Perreira,M.,
               Pinto,L.S.R.C., Pinto,L.S., Porto,J.I.R., Potrich,D.P.,
               Neto,C.E.R., Reis,A.M.M., Rigo,L.U., Rondinelli,E., dos
               Santos,E.B.P., Santos,F.R., Schneider,M.P.C., Seuanez,H.N.,
               Silva,A.M.R., da Silva,A.L.C., Silva,D.W., Silva,R., Simoes,I.C.,
               Simon,D., Soares,C.M.A., Soares,R.B.A., Souza,E.M., Souza,K.R.L.,
               Souza,R.C., Steffens,M.B.R., Steindel,M., Teixeira,S.R.,
               Urmenyi,T., Vettore,A., Wassem,R., Zaha,A. and Simpson,A.J.G.
     TITLE     The complete genome sequence of Chromobacterium violaceum reveals
               remarkable and exploitable bacterial adaptability
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 100 (20), 11660-11665 (2003)
      PUBMED   14500782
   REFERENCE   2  (bases 1 to 4751080)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4751080)
     AUTHORS   Vasconcelos,A.T.R., de Almeida,D.F., Almeida,F.C., de
               Almeida,L.G.P., de Almeida,R., Goncalves,J.A.A., Andrade,E.M.,
               Antonio,R.V., Araripe,J., de Araujo,M.F.F., Filho,S.A., Azevedo,V.,
               Batista,A.J., Bataus,L.A.M., Batista,J.S., Belo,A., vander Berg,C.,
               Blamey,J., Bogo,M., Bonato,S., Bordignon,J., Brito,C.A.,
               Brocchi,M., Burity,H.A., Camargo,A.A., Cardoso,D.D.P.,
               Carneiro,N.P., Carraro,D.M., Carvalho,C.M.B., Cascardo,J.C.M.,
               Cavada,B.S., Chueire,L.M.O., Pasa,T.B.C., Duran,N., Fagundes,N.,
               Falcao,C.L., Fantinatti,F., Farias,I.P., Felipe,M.S.S.,
               Ferrari,L.P., Ferro,J.A., Ferro,M.I.T., Franco,G.R.,
               Freitas,N.S.A., Furlan,L.R., Gazzinelli,R.T., Gomes,E.A.,
               Goncalves,P.R., Grangeiro,T.B., Grattapaglia,D., Grisard,E.C.,
               Guimaraes,C.T., Hanna,E.S., Hungria,M., Jardim,S.N., Laurino,J.,
               Leoi,L.C.T., Fassarella,L., Lima,A., Loureiro,M.F., Lyra,M.C.P.,
               Macedo,M., Madeira,H.M.F., Manfio,G.P., Maranhao,A.Q.,
               Martins,W.S., di Mauro,S.M.Z., de Medeiros,S.R.B., Meissner,R.D.V.,
               Menck,C.F.M., Moreira,M.A.M., Nascimento,F.F., Nicolas,M.F.,
               Oliveira,J.G., Oliveira,S.C., Paixao,R.F.C., Parente,J.A.,
               Pedrosa,F.O., Pena,S.J.D., Perreira,J.O., Perreira,M.,
               Pinto,L.S.R.C., Pinto,L.S., Porto,J.I.R., Potrich,D.P.,
               Neto,C.E.R., Reis,A.M.M., Rigo,L.U., Rondinelli,E., dos
               Santos,E.B.P., Santos,F.R., Schneider,M.P.C., Seuanez,H.N.,
               Silva,A.M.R., da Silva,A.L.C., Silva,D.W., Silva,R., Simoes,I.C.,
               Simon,D., Soares,C.M.A., Soares,R.B.A., Souza,E.M., Souza,K.R.L.,
               Souza,R.C., Steffens,M.B.R., Steindel,M., Teixeira,S.R.,
               Urmenyi,T., Vettore,A., Wassem,R., Zaha,A. and Simpson,A.J.G.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-JAN-2003) Labinfo, LNCC - Laboratorio Nacional de
               Computacao Cientifica, Rua Getulio Vargas 333, Petropolis, RJ
               25651070, Brazil
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE016825.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
421225	422698	+	1474	34495455	CV_rRNA16s1	-	16S ribosomal RNA
422942	423018	+	77	34495455	CV_tRNAIleGAT1	-	^{14 Ile tRNA}
423105	423180	+	76	34495455	CV_tRNAAlaTGC1	-	^{02 Ala tRNA}
423379	426318	+	2940	34495455	CV_rRNA23s1	-	23S ribosomal RNA
426319	426561	+	243	34495455	CV_rRNA5s1	-	5S ribosomal RNA
502190	503663	+	1474	34495455	CV_rRNA16s2	-	16S ribosomal RNA
503807	503883	+	77	34495455	CV_tRNAIleGAT2	-	^{14 Ile tRNA}
503896	503971	+	76	34495455	CV_tRNAAlaTGC2	-	^{02 Ala tRNA}
504171	507110	+	2940	34495455	CV_rRNA23s2	-	23S ribosomal RNA
507111	507350	+	240	34495455	CV_rRNA5s2	-	5S ribosomal RNA
682034	682118	-	85	34495455	CV_tRNALeuCAA	-	^{15 Leu tRNA}
759824	759908	+	85	34495455	CV_tRNATyrGTA1	-	^{18 Tyr tRNA}
878775	878849	-	75	34495455	CV_tRNAArgCCT	-	^{11 Arg tRNA}
955155	955230	+	76	34495455	CV_tRNAAlaCGC	-	^{02 Ala tRNA}
975612	975696	+	85	34495455	CV_tRNALeuGAG	-	^{15 Leu tRNA}
1006822	1006897	+	76	34495455	CV_tRNAPheGAA1	-	^{17 Phe tRNA}
1006904	1006979	+	76	34495455	CV_tRNAPheGAA2	-	^{17 Phe tRNA}
1058518	1058611	+	94	34495455	CV_tRNASerGCT	-	^{08 Ser tRNA}
1058618	1058694	+	77	34495455	CV_tRNAArgACG1	-	^{11 Arg tRNA}
1058698	1058772	+	75	34495455	CV_tRNAGluTTC1	-	^{04 Glu tRNA}
1061741	1061815	-	75	34495455	CV_tRNAGluTTC2	-	^{04 Glu tRNA}
1061819	1061895	-	77	34495455	CV_tRNAArgACG2	-	^{11 Arg tRNA}
1061903	1061977	-	75	34495455	CV_tRNAGluTTC3	-	^{04 Glu tRNA}
1061983	1062059	-	77	34495455	CV_tRNAArgACG3	-	^{11 Arg tRNA}
1154028	1155501	+	1474	34495455	CV_rRNA16s3	-	16S ribosomal RNA
1155745	1155821	+	77	34495455	CV_tRNAIleGAT3	-	^{14 Ile tRNA}
1155908	1155983	+	76	34495455	CV_tRNAAlaTGC3	-	^{02 Ala tRNA}
1156183	1159122	+	2940	34495455	CV_rRNA23s3	-	23S ribosomal RNA
1159123	1159362	+	240	34495455	CV_rRNA5s3	-	5S ribosomal RNA
1263556	1263645	-	90	34495455	CV_tRNASerCGA	-	^{08 Ser tRNA}
1273710	1273786	+	77	34495455	CV_tRNAMetCAT1	-	^{16 Met tRNA}
1377435	1377510	+	76	34495455	CV_tRNAGlyGCC1	-	^{01 Gly tRNA}
1377534	1377609	+	76	34495455	CV_tRNAGlyGCC2	-	^{01 Gly tRNA}
1377632	1377707	+	76	34495455	CV_tRNAGlyGCC3	-	^{01 Gly tRNA}
1377732	1377807	+	76	34495455	CV_tRNAGlyGCC4	-	^{01 Gly tRNA}
1377837	1377912	+	76	34495455	CV_tRNAGlyGCC5	-	^{01 Gly tRNA}
1377958	1378031	+	74	34495455	CV_tRNACysGCA	-	^{19 Cys tRNA}
1387010	1387094	+	85	34495455	CV_tRNALeuTAA	-	^{15 Leu tRNA}
1420085	1420161	+	77	34495455	CV_tRNAValGAC	-	^{13 Val tRNA}
1427771	1427847	+	77	34495455	CV_tRNAProGGG	-	^{03 Pro tRNA}
1433244	1433319	-	76	34495455	CV_tRNAAsnGTT1	-	^{07 Asn tRNA}
1433352	1433427	-	76	34495455	CV_tRNAAsnGTT2	-	^{07 Asn tRNA}
1433459	1433534	-	76	34495455	CV_tRNAAsnGTT3	-	^{07 Asn tRNA}
1646829	1648302	+	1474	34495455	CV_rRNA16s4	-	16S ribosomal RNA
1648546	1648622	+	77	34495455	CV_tRNAIleGAT4	-	^{14 Ile tRNA}
1648709	1648784	+	76	34495455	CV_tRNAAlaTGC4	-	^{02 Ala tRNA}
1648983	1651922	+	2940	34495455	CV_rRNA23s4	-	23S ribosomal RNA
1651923	1652162	+	240	34495455	CV_rRNA5s4	-	5S ribosomal RNA
1652253	1652371	+	119	34495455	CV_r01	-	5S ribosomal RNA
1746117	1746207	+	91	34495455	CV_tRNASerGGA1	-	^{08 Ser tRNA}
1746261	1746351	+	91	34495455	CV_tRNASerGGA2	-	^{08 Ser tRNA}
1978844	1978919	+	76	34495455	CV_tRNAAsnGTT4	-	^{07 Asn tRNA}
2094372	2094447	-	76	34495455	CV_tRNAHisGTG1	-	^{09 His tRNA}
2094474	2094549	-	76	34495455	CV_tRNAHisGTG2	-	^{09 His tRNA}
2094595	2094670	-	76	34495455	CV_tRNAHisGTG3	-	^{09 His tRNA}
2094698	2094774	-	77	34495455	CV_tRNAArgTCT	-	^{11 Arg tRNA}
2094793	2094869	-	77	34495455	CV_tRNAProTGG	-	^{03 Pro tRNA}
2511625	2511712	-	88	34495455	CV_tRNASerTGA	-	^{08 Ser tRNA}
2747299	2747375	-	77	34495455	CV_tRNAAspGTC1	-	^{06 Asp tRNA}
2747383	2747458	-	76	34495455	CV_tRNAValTAC1	-	^{13 Val tRNA}
2853221	2853305	+	85	34495455	CV_tRNALeuTAG	-	^{15 Leu tRNA}
3187082	3187157	+	76	34495455	CV_tRNAThrTGT	-	^{12 Thr tRNA}
3257362	3257437	+	76	34495455	CV_tRNAAlaGGC1	-	^{02 Ala tRNA}
3262246	3262321	+	76	34495455	CV_tRNAAlaGGC2	-	^{02 Ala tRNA}
3262330	3262405	+	76	34495455	CV_tRNAGluTTC4	-	^{04 Glu tRNA}
3262417	3262492	+	76	34495455	CV_tRNAAlaGGC3	-	^{02 Ala tRNA}
3371481	3371720	-	240	34495455	CV_rRNA5s5	-	5S ribosomal RNA
3371721	3374660	-	2940	34495455	CV_rRNA23s5	-	23S ribosomal RNA
3374860	3374935	-	76	34495455	CV_tRNAAlaTGC5	-	^{02 Ala tRNA}
3374948	3375024	-	77	34495455	CV_tRNAIleGAT5	-	^{14 Ile tRNA}
3375168	3376641	-	1474	34495455	CV_rRNA16s5	-	16S ribosomal RNA
3472822	3472897	+	76	34495455	CV_tRNAValTAC2	-	^{13 Val tRNA}
3472910	3472986	+	77	34495455	CV_tRNAAspGTC2	-	^{06 Asp tRNA}
3473013	3473088	+	76	34495455	CV_tRNAValTAC3	-	^{13 Val tRNA}
3473101	3473177	+	77	34495455	CV_tRNAAspGTC3	-	^{06 Asp tRNA}
3473204	3473279	+	76	34495455	CV_tRNAValTAC4	-	^{13 Val tRNA}
3473292	3473368	+	77	34495455	CV_tRNAAspGTC4	-	^{06 Asp tRNA}
3473395	3473470	+	76	34495455	CV_tRNAValTAC5	-	^{13 Val tRNA}
3473483	3473559	+	77	34495455	CV_tRNAAspGTC5	-	^{06 Asp tRNA}
3473587	3473663	+	77	34495455	CV_tRNAValCAC1	-	^{13 Val tRNA}
3473670	3473746	+	77	34495455	CV_tRNAAspGTC6	-	^{06 Asp tRNA}
3473774	3473850	+	77	34495455	CV_tRNAValCAC2	-	^{13 Val tRNA}
3473857	3473933	+	77	34495455	CV_tRNAAspGTC7	-	^{06 Asp tRNA}
3622292	3622365	+	74	34495455	CV_tRNAGlyCCC	-	^{01 Gly tRNA}
3820123	3820362	-	240	34495455	CV_rRNA5s6	-	5S ribosomal RNA
3820363	3823302	-	2940	34495455	CV_rRNA23s6	-	23S ribosomal RNA
3823501	3823576	-	76	34495455	CV_tRNAAlaTGC6	-	^{02 Ala tRNA}
3823663	3823739	-	77	34495455	CV_tRNAIleGAT6	-	^{14 Ile tRNA}
3823983	3825456	-	1474	34495455	CV_rRNA16s6	-	16S ribosomal RNA
3828836	3828922	+	87	34495455	CV_tRNALeuCAG1	-	^{15 Leu tRNA}
3828974	3829060	+	87	34495455	CV_tRNALeuCAG2	-	^{15 Leu tRNA}
3829094	3829180	+	87	34495455	CV_tRNALeuCAG3	-	^{15 Leu tRNA}
3829238	3829324	+	87	34495455	CV_tRNALeuCAG4	-	^{15 Leu tRNA}
3854547	3854622	-	76	34495455	CV_tRNAGlnTTG1	-	^{05 Gln tRNA}
3855180	3855255	-	76	34495455	CV_tRNAThrCGT	-	^{12 Thr tRNA}
3855317	3855393	-	77	34495455	CV_tRNAProCGG1	-	^{03 Pro tRNA}
3855472	3855548	-	77	34495455	CV_tRNAProCGG2	-	^{03 Pro tRNA}
4059834	4059912	-	79	34495455	CV_tRNAMetCAT2	-	^{16 Met tRNA}
4244594	4244833	-	240	34495455	CV_rRNA5s7	-	5S ribosomal RNA
4244834	4247773	-	2940	34495455	CV_rRNA23s7	-	23S ribosomal RNA
4247972	4248047	-	76	34495455	CV_tRNAAlaTGC7	-	^{02 Ala tRNA}
4248134	4248210	-	77	34495455	CV_tRNAIleGAT7	-	^{14 Ile tRNA}
4248454	4249927	-	1474	34495455	CV_rRNA16s7	-	16S ribosomal RNA
4325718	4325794	-	77	34495455	CV_tRNAMetCAT3	-	^{16 Met tRNA}
4389268	4389342	-	75	34495455	CV_tRNAGlnTTG2	-	^{05 Gln tRNA}
4402077	4402153	+	77	34495455	CV_tRNAArgCCG	-	^{11 Arg tRNA}
4434133	4434372	-	240	34495455	CV_rRNA5s8	-	5S ribosomal RNA
4434373	4437312	-	2940	34495455	CV_rRNA23s8	-	23S ribosomal RNA
4437511	4437586	-	76	34495455	CV_tRNAAlaTGC8	-	^{02 Ala tRNA}
4437673	4437749	-	77	34495455	CV_tRNAIleGAT8	-	^{14 Ile tRNA}
4437993	4439466	-	1474	34495455	CV_rRNA16s8	-	16S ribosomal RNA
4474196	4474272	+	77	34495455	CV_tRNAMetCAT4	-	^{16 Met tRNA}
4474308	4474384	+	77	34495455	CV_tRNAMetCAT5	-	^{16 Met tRNA}
4529616	4529690	-	75	34495455	CV_tRNAThrGGT1	-	^{12 Thr tRNA}
4532053	4532128	-	76	34495455	CV_tRNATrpCCA	-	^{20 Trp tRNA}
4533370	4533444	-	75	34495455	CV_tRNAThrGGT2	-	^{12 Thr tRNA}
4533469	4533542	-	74	34495455	CV_tRNAGlyTCC	-	^{01 Gly tRNA}
4533595	4533679	-	85	34495455	CV_tRNATyrGTA2	-	^{18 Tyr tRNA}
4586712	4586787	-	76	34495455	CV_tRNALysTTT1	-	^{10 Lys tRNA}
4586826	4586901	-	76	34495455	CV_tRNALysCTT1	-	^{10 Lys tRNA}
4586937	4587012	-	76	34495455	CV_tRNALysTTT2	-	^{10 Lys tRNA}
4587041	4587116	-	76	34495455	CV_tRNALysCTT2	-	^{10 Lys tRNA}
4587154	4587229	-	76	34495455	CV_tRNALysTTT3	-	^{10 Lys tRNA}