Геном прокариот/Материалы:NC 005296
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Базовый уровень статей |
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LOCUS NC_005296 5459213 bp DNA circular BCT 30-MAY-2006
DEFINITION Rhodopseudomonas palustris CGA009, complete genome.
ACCESSION NC_005296
VERSION NC_005296.1 GI:39933080
KEYWORDS complete genomes.
SOURCE Rhodopseudomonas palustris CGA009
ORGANISM Rhodopseudomonas palustris CGA009
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Bradyrhizobiaceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 5459213)
AUTHORS Larimer,F.W., Chain,P., Hauser,L., Lamerdin,J., Malfatti,S., Do,L.,
Land,M.L., Pelletier,D.A., Beatty,J.T., Lang,A.S., Tabita,F.R.,
Gibson,J.L., Hanson,T.E., Bobst,C., Torres,J.L., Peres,C.,
Harrison,F.H., Gibson,J. and Harwood,C.S.
TITLE Complete genome sequence of the metabolically versatile
photosynthetic bacterium Rhodopseudomonas palustris
JOURNAL Nat. Biotechnol. 22 (1), 55-61 (2004)
PUBMED 14704707
REFERENCE 2 (bases 1 to 5459213)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (11-SEP-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5459213)
CONSRTM NCBI Microbial Genomes Annotation Project
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2003) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from BX571963.
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 52242 | 52326 | + | 85 | 39933080 | RNA_3 | - | 15 Leu tRNA |
| 66510 | 66585 | - | 76 | 39933080 | RNA_41 | - | 02 Ala tRNA |
| 175721 | 175810 | - | 90 | 39933080 | RNA_40 | - | 08 Ser tRNA |
| 284219 | 284294 | + | 76 | 39933080 | RNA_4 | - | 12 Thr tRNA |
| 295291 | 295365 | - | 75 | 39933080 | RNA_39 | - | 01 Gly tRNA |
| 399949 | 400023 | + | 75 | 39933080 | RNA_5 | - | 04 Glu tRNA |
| 458356 | 458431 | + | 76 | 39933080 | RNA_6 | - | 02 Ala tRNA |
| 526626 | 526702 | - | 77 | 39933080 | RNA_38 | - | 11 Arg tRNA |
| 604599 | 604683 | - | 85 | 39933080 | RNA_37 | - | 15 Leu tRNA |
| 682366 | 682468 | + | 103 | 39933080 | RNA_60 | - | signal recognition particle 4.5 S RNA |
| 702780 | 702856 | + | 77 | 39933080 | RNA_7 | - | 11 Arg tRNA |
| 858392 | 858468 | + | 77 | 39933080 | RNA_8 | - | 11 Arg tRNA |
| 1009620 | 1009694 | + | 75 | 39933080 | RNA_9 | - | 13 Val tRNA |
| 1061293 | 1061367 | + | 75 | 39933080 | RNA_10 | - | 05 Gln tRNA |
| 1189709 | 1189785 | + | 77 | 39933080 | RNA_11 | - | 03 Pro tRNA |
| 1428260 | 1428336 | + | 77 | 39933080 | RNA_12 | - | 16 Met tRNA |
| 1802489 | 1802563 | - | 75 | 39933080 | RNA_36 | - | 13 Val tRNA |
| 1824830 | 1824905 | + | 76 | 39933080 | RNA_13 | - | 16 Met tRNA |
| 1884001 | 1884077 | + | 77 | 39933080 | RNA_14 | - | 16 Met tRNA |
| 2309175 | 2309250 | + | 76 | 39933080 | RNA_15 | - | 10 Lys tRNA |
| 2728479 | 2728568 | - | 90 | 39933080 | RNA_35 | - | 08 Ser tRNA |
| 2744879 | 2744972 | - | 94 | 39933080 | RNA_34 | - | 08 Ser tRNA |
| 2862480 | 2862554 | - | 75 | 39933080 | RNA_33 | - | 04 Glu tRNA |
| 2866851 | 2866927 | + | 77 | 39933080 | RNA_16 | - | 03 Pro tRNA |
| 2893816 | 2893892 | - | 77 | 39933080 | RNA_32 | - | 11 Arg tRNA |
| 2929967 | 2930040 | - | 74 | 39933080 | RNA_31 | - | 19 Cys tRNA |
| 2933792 | 2933866 | - | 75 | 39933080 | RNA_30 | - | 07 Asn tRNA |
| 3018453 | 3018528 | - | 76 | 39933080 | RNA_29 | - | 10 Lys tRNA |
| 3114233 | 3114310 | + | 78 | 39933080 | RNA_17 | - | 03 Pro tRNA |
| 3338329 | 3338405 | - | 77 | 39933080 | RNA_28 | - | 06 Asp tRNA |
| 3345173 | 3345249 | + | 77 | 39933080 | RNA_18 | - | 13 Val tRNA |
| 3356438 | 3356522 | - | 85 | 39933080 | RNA_27 | - | 15 Leu tRNA |
| 3574656 | 3574740 | - | 85 | 39933080 | RNA_26 | - | 15 Leu tRNA |
| 3591387 | 3591463 | + | 77 | 39933080 | RNA_19 | - | 11 Arg tRNA |
| 3701564 | 3701639 | - | 76 | 39933080 | RNA_25 | - | 20 Trp tRNA |
| 3729414 | 3729487 | - | 74 | 39933080 | RNA_24 | - | 01 Gly tRNA |
| 3807111 | 3807196 | - | 86 | 39933080 | RNA_23 | - | 18 Tyr tRNA |
| 3809553 | 3809627 | + | 75 | 39933080 | RNA_20 | - | 12 Thr tRNA |
| 3879766 | 3879854 | - | 89 | 39933080 | RNA_22 | - | 15 Leu tRNA |
| 3934358 | 3934431 | + | 74 | 39933080 | RNA_21 | - | 05 Gln tRNA |
| 3948454 | 3948784 | + | 331 | 39933080 | RNA_56 | - | tmRNA |
| 4004668 | 4005137 | + | 470 | 39933080 | RNA_59 | - | Ribonuclease P RNA |
| 4608449 | 4608523 | + | 75 | 39933080 | RNA_1 | - | Xaa tRNA |
| 4678879 | 4678955 | - | 77 | 39933080 | RNA_49 | - | 09 His tRNA |
| 4991995 | 4998356 | - | 6362 | 39933080 | RNA_57 | - | RrnB |
| 4992384 | 4992504 | - | 121 | 39933080 | RNA_50 | - | 5S ribosomal RNA |
| 4992581 | 4995470 | - | 2890 | 39933080 | RNA_51 | - | 23S ribosomal RNA |
| 4995815 | 4995890 | - | 76 | 39933080 | RNA_48 | - | 02 Ala tRNA |
| 4995924 | 4996000 | - | 77 | 39933080 | RNA_47 | - | 14 Ile tRNA |
| 4996218 | 4997699 | - | 1482 | 39933080 | RNA_52 | - | 16S ribosomal RNA |
| 5107941 | 5108016 | - | 76 | 39933080 | RNA_46 | - | 17 Phe tRNA |
| 5118650 | 5118724 | + | 75 | 39933080 | RNA_2 | - | 12 Thr tRNA |
| 5246084 | 5252077 | - | 5994 | 39933080 | RNA_58 | - | |
| 5246149 | 5246269 | - | 121 | 39933080 | RNA_53 | - | 5S ribosomal RNA |
| 5246346 | 5249235 | - | 2890 | 39933080 | RNA_54 | - | 23S ribosomal RNA |
| 5249580 | 5249655 | - | 76 | 39933080 | RNA_45 | - | 02 Ala tRNA |
| 5249689 | 5249765 | - | 77 | 39933080 | RNA_44 | - | 14 Ile tRNA |
| 5249983 | 5251464 | - | 1482 | 39933080 | RNA_55 | - | 16S ribosomal RNA |
| 5252330 | 5252419 | - | 90 | 39933080 | RNA_43 | - | 08 Ser tRNA |
| 5374719 | 5374792 | - | 74 | 39933080 | RNA_42 | - | 01 Gly tRNA |