Геном прокариот/Материалы:NC 007512

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007512            2364842 bp    DNA     circular BCT 31-MAR-2006
   DEFINITION  Pelodictyon luteolum DSM 273, complete genome.
   ACCESSION   NC_007512
   VERSION     NC_007512.1  GI:78185892
   KEYWORDS    .
   SOURCE      Pelodictyon luteolum DSM 273
     ORGANISM  Pelodictyon luteolum DSM 273
               Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae;
               Chlorobium/Pelodictyon group; Pelodictyon.
   REFERENCE   1  (bases 1 to 2364842)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Bryant,D.,
               Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Pelodictyon luteolum DSM 273
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2364842)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (27-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2364842)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Bryant,D.,
               Schmutz,J., Larimer,F., Land,M., Ivanova,N. and Richardson,P.
     TITLE     Direct Submission
     JOURNAL   Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000096.
               URL -- http://www.jgi.doe.gov
               Source DNA available from Don Bryant (dab14@psu.edu)
               Bacteria available from DSMZ: DSM 273
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done at Penn State University
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
27006	27078	-	73	78185892	Plut_R0048	-	^{12 Thr tRNA}
82719	82792	+	74	78185892	Plut_R0001	-	^{13 Val tRNA}
107760	109122	+	1363	78185892	Plut_R0049	-	16S ribosomal RNA
109367	109443	+	77	78185892	Plut_R0002	-	^{14 Ile tRNA}
109483	109558	+	76	78185892	Plut_R0003	-	^{02 Ala tRNA}
109699	112448	+	2750	78185892	Plut_R0050	-	23S ribosomal RNA
112721	112830	+	110	78185892	Plut_R0051	-	5S ribosomal RNA
116732	118095	+	1364	78185892	Plut_R0052	-	16S ribosomal RNA
118340	118416	+	77	78185892	Plut_R0004	-	^{14 Ile tRNA}
118456	118531	+	76	78185892	Plut_R0005	-	^{02 Ala tRNA}
118672	121421	+	2750	78185892	Plut_R0053	-	23S ribosomal RNA
121694	121803	+	110	78185892	Plut_R0054	-	5S ribosomal RNA
148563	148637	-	75	78185892	Plut_R0047	-	^{07 Asn tRNA}
193418	193490	+	73	78185892	Plut_R0006	-	^{01 Gly tRNA}
345943	346020	-	78	78185892	Plut_R0046	-	^{06 Asp tRNA}
503406	503481	-	76	78185892	Plut_R0045	-	^{02 Ala tRNA}
595182	595255	+	74	78185892	Plut_R0007	-	^{13 Val tRNA}
623735	623821	-	87	78185892	Plut_R0044	-	^{08 Ser tRNA}
625153	625228	-	76	78185892	Plut_R0043	-	^{01 Gly tRNA}
655439	655511	-	73	78185892	Plut_R0042	-	^{05 Gln tRNA}
656539	656615	-	77	78185892	Plut_R0041	-	^{11 Arg tRNA}
656666	656739	-	74	78185892	Plut_R0040	-	^{04 Glu tRNA}
656769	656842	-	74	78185892	Plut_R0039	-	^{16 Met tRNA}
690039	690115	-	77	78185892	Plut_R0038	-	^{10 Lys tRNA}
773759	773833	+	75	78185892	Plut_R0008	-	^{05 Gln tRNA}
826324	826396	+	73	78185892	Plut_R0009	-	^{03 Pro tRNA}
826422	826497	+	76	78185892	Plut_R0010	-	^{11 Arg tRNA}
826529	826604	+	76	78185892	Plut_R0011	-	^{09 His tRNA}
826613	826684	+	72	78185892	Plut_R0012	-	^{04 Glu tRNA}
834840	834914	+	75	78185892	Plut_R0013	-	^{10 Lys tRNA}
852974	853060	-	87	78185892	Plut_R0037	-	^{15 Leu tRNA}
853071	853155	-	85	78185892	Plut_R0036	-	^{15 Leu tRNA}
908983	909069	+	87	78185892	Plut_R0014	-	^{08 Ser tRNA}
909159	909244	+	86	78185892	Plut_R0015	-	^{08 Ser tRNA}
909256	909348	+	93	78185892	Plut_R0016	-	^{08 Ser tRNA}
1029358	1029434	-	77	78185892	Plut_R0035	-	^{13 Val tRNA}
1105965	1106038	-	74	78185892	Plut_R0034	-	^{19 Cys tRNA}
1345016	1345091	-	76	78185892	Plut_R0033	-	^{16 Met tRNA}
1450838	1450910	-	73	78185892	Plut_R0032	-	^{03 Pro tRNA}
1450926	1450998	-	73	78185892	Plut_R0031	-	^{11 Arg tRNA}
1489391	1489467	+	77	78185892	Plut_R0017	-	^{16 Met tRNA}
1491943	1492018	+	76	78185892	Plut_R0018	-	^{01 Gly tRNA}
1525362	1525446	+	85	78185892	Plut_R0019	-	^{15 Leu tRNA}
1928051	1928123	-	73	78185892	Plut_R0030	-	^{17 Phe tRNA}
1965126	1965207	-	82	78185892	Plut_R0029	-	^{15 Leu tRNA}
1965241	1965316	-	76	78185892	Plut_R0028	-	^{10 Lys tRNA}
2142997	2143085	+	89	78185892	Plut_R0020	-	^{15 Leu tRNA}
2158066	2158139	-	74	78185892	Plut_R0027	-	^{03 Pro tRNA}
2191048	2191120	-	73	78185892	Plut_R0026	-	^{20 Trp tRNA}
2191138	2191213	-	76	78185892	Plut_R0025	-	^{12 Thr tRNA}
2191238	2191320	-	83	78185892	Plut_R0024	-	^{18 Tyr tRNA}
2191333	2191405	-	73	78185892	Plut_R0023	-	^{12 Thr tRNA}
2205241	2205313	-	73	78185892	Plut_R0022	-	^{11 Arg tRNA}
2327937	2328009	-	73	78185892	Plut_R0021	-	^{02 Ala tRNA}