Геном прокариот/Материалы:NC 007958
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Базовый уровень статей |
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LOCUS NC_007958 4892717 bp DNA circular BCT 14-APR-2006
DEFINITION Rhodopseudomonas palustris BisB5, complete genome.
ACCESSION NC_007958
VERSION NC_007958.1 GI:91974482
KEYWORDS .
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Bradyrhizobiaceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-APR-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000283.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 81952 | 82028 | - | 77 | 91974482 | RPD_R0001 | - | 11 Arg tRNA |
| 103759 | 103861 | - | 103 | 91974482 | RPD_R0002 | - | SRP RNA; RNA component of signal recognition particle |
| 198196 | 198282 | + | 87 | 91974482 | RPD_R0003 | - | 15 Leu tRNA |
| 212220 | 212295 | - | 76 | 91974482 | RPD_R0004 | - | 02 Ala tRNA |
| 307559 | 307635 | - | 77 | 91974482 | RPD_R0006 | - | 11 Arg tRNA |
| 379446 | 379530 | - | 85 | 91974482 | RPD_R0007 | - | 15 Leu tRNA |
| 403348 | 403467 | - | 120 | 91974482 | RPD_R0008 | - | 5S ribosomal RNA |
| 403572 | 406403 | - | 2832 | 91974482 | RPD_R0009 | - | 23S ribosomal RNA |
| 406806 | 406881 | - | 76 | 91974482 | RPD_R0010 | - | 02 Ala tRNA |
| 406915 | 406991 | - | 77 | 91974482 | RPD_R0011 | - | 14 Ile tRNA |
| 407217 | 408691 | - | 1475 | 91974482 | RPD_R0012 | - | 16S ribosomal RNA |
| 424369 | 424443 | - | 75 | 91974482 | RPD_R0013 | - | 04 Glu tRNA |
| 524502 | 524576 | + | 75 | 91974482 | RPD_R0014 | - | 01 Gly tRNA |
| 537564 | 537639 | - | 76 | 91974482 | RPD_R0015 | - | 12 Thr tRNA |
| 663698 | 663787 | + | 90 | 91974482 | RPD_R0016 | - | 08 Ser tRNA |
| 714109 | 714317 | + | 209 | 91974482 | RPD_R0017 | - | |
| 727425 | 727646 | - | 222 | 91974482 | RPD_R0018 | - | |
| 776811 | 776886 | - | 76 | 91974482 | RPD_R0019 | - | 02 Ala tRNA |
| 785607 | 785805 | + | 199 | 91974482 | RPD_R0020 | - | |
| 852454 | 852530 | - | 77 | 91974482 | RPD_R0021 | - | 11 Arg tRNA |
| 1026149 | 1026222 | + | 74 | 91974482 | RPD_R0022 | - | 01 Gly tRNA |
| 1171800 | 1171889 | + | 90 | 91974482 | RPD_R0023 | - | 08 Ser tRNA |
| 1410553 | 1410629 | + | 77 | 91974482 | RPD_R0024 | - | 03 Pro tRNA |
| 1620308 | 1620384 | + | 77 | 91974482 | RPD_R0025 | - | 09 His tRNA |
| 1629987 | 1630061 | - | 75 | 91974482 | RPD_R0026 | - | Xaa tRNA |
| 1676578 | 1676654 | + | 77 | 91974482 | RPD_R0027 | - | 16 Met tRNA |
| 1946441 | 1946529 | - | 89 | 91974482 | RPD_R0028 | - | |
| 1946531 | 1946621 | - | 91 | 91974482 | RPD_R0029 | - | |
| 2369307 | 2369382 | + | 76 | 91974482 | RPD_R0030 | - | 10 Lys tRNA |
| 2436981 | 2437051 | + | 71 | 91974482 | RPD_R0031 | - | 08 Ser tRNA |
| 2437685 | 2437791 | + | 107 | 91974482 | RPD_R0032 | - | |
| 2565609 | 2565817 | - | 209 | 91974482 | RPD_R0033 | - | |
| 2565965 | 2566040 | - | 76 | 91974482 | RPD_R0034 | - | 19 Cys tRNA |
| 2591019 | 2591234 | - | 216 | 91974482 | RPD_R0035 | - | |
| 2593935 | 2594143 | + | 209 | 91974482 | RPD_R0036 | - | |
| 2681517 | 2681606 | - | 90 | 91974482 | RPD_R0037 | - | 08 Ser tRNA |
| 2689809 | 2689902 | - | 94 | 91974482 | RPD_R0038 | - | 08 Ser tRNA |
| 2829215 | 2829289 | - | 75 | 91974482 | RPD_R0039 | - | 04 Glu tRNA |
| 2833690 | 2833766 | + | 77 | 91974482 | RPD_R0040 | - | 03 Pro tRNA |
| 2850410 | 2850486 | - | 77 | 91974482 | RPD_R0041 | - | 11 Arg tRNA |
| 2884542 | 2884615 | + | 74 | 91974482 | RPD_R0042 | - | 19 Cys tRNA |
| 2886320 | 2886394 | - | 75 | 91974482 | RPD_R0043 | - | 07 Asn tRNA |
| 2922258 | 2922333 | - | 76 | 91974482 | RPD_R0044 | - | 10 Lys tRNA |
| 3003929 | 3004006 | + | 78 | 91974482 | RPD_R0045 | - | 03 Pro tRNA |
| 3216567 | 3216643 | - | 77 | 91974482 | RPD_R0046 | - | 06 Asp tRNA |
| 3219206 | 3219282 | + | 77 | 91974482 | RPD_R0047 | - | 13 Val tRNA |
| 3226277 | 3226361 | - | 85 | 91974482 | RPD_R0048 | - | 15 Leu tRNA |
| 3255793 | 3256000 | - | 208 | 91974482 | RPD_R0049 | - | |
| 3256310 | 3256518 | + | 209 | 91974482 | RPD_R0050 | - | |
| 3259915 | 3260113 | - | 199 | 91974482 | RPD_R0051 | - | |
| 3427966 | 3428050 | - | 85 | 91974482 | RPD_R0052 | - | 15 Leu tRNA |
| 3446452 | 3446528 | + | 77 | 91974482 | RPD_R0053 | - | 11 Arg tRNA |
| 3553731 | 3553806 | - | 76 | 91974482 | RPD_R0054 | - | 20 Trp tRNA |
| 3563784 | 3563857 | - | 74 | 91974482 | RPD_R0055 | - | 01 Gly tRNA |
| 3585880 | 3585965 | - | 86 | 91974482 | RPD_R0056 | - | 18 Tyr tRNA |
| 3588448 | 3588522 | - | 75 | 91974482 | RPD_R0057 | - | 12 Thr tRNA |
| 3647447 | 3647533 | - | 87 | 91974482 | RPD_R0058 | - | 15 Leu tRNA |
| 3701577 | 3701650 | + | 74 | 91974482 | RPD_R0059 | - | 05 Gln tRNA |
| 3723648 | 3724002 | + | 355 | 91974482 | RPD_R0060 | - | tmRNA |
| 3783877 | 3784294 | + | 418 | 91974482 | RPD_R0061 | - | RNA component of RNaseP |
| 3812110 | 3812251 | + | 142 | 91974482 | RPD_R0062 | - | |
| 4091273 | 4091348 | - | 76 | 91974482 | RPD_R0063 | - | 16 Met tRNA |
| 4111391 | 4111465 | + | 75 | 91974482 | RPD_R0064 | - | 13 Val tRNA |
| 4407931 | 4408007 | - | 77 | 91974482 | RPD_R0065 | - | 16 Met tRNA |
| 4547019 | 4547138 | - | 120 | 91974482 | RPD_R0066 | - | 5S ribosomal RNA |
| 4547243 | 4550074 | - | 2832 | 91974482 | RPD_R0067 | - | 23S ribosomal RNA |
| 4550477 | 4550552 | - | 76 | 91974482 | RPD_R0068 | - | 02 Ala tRNA |
| 4550586 | 4550662 | - | 77 | 91974482 | RPD_R0069 | - | 14 Ile tRNA |
| 4550888 | 4552362 | - | 1475 | 91974482 | RPD_R0070 | - | 16S ribosomal RNA |
| 4739264 | 4739339 | - | 76 | 91974482 | RPD_R0071 | - | 17 Phe tRNA |
| 4747188 | 4747262 | + | 75 | 91974482 | RPD_R0072 | - | 12 Thr tRNA |
| 4760460 | 4760534 | - | 75 | 91974482 | RPD_R0073 | - | 05 Gln tRNA |
| 4820132 | 4820206 | - | 75 | 91974482 | RPD_R0074 | - | 13 Val tRNA |
| 4855579 | 4855783 | + | 205 | 91974482 | RPD_R0075 | - |