Геном прокариот/Материалы:NC 008344

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008344            2661057 bp    DNA     circular BCT 21-MAY-2007
   DEFINITION  Nitrosomonas eutropha C91, complete genome.
   ACCESSION   NC_008344
   VERSION     NC_008344.1  GI:114330036
   KEYWORDS    .
   SOURCE      Nitrosomonas eutropha C91
     ORGANISM  Nitrosomonas eutropha C91
               Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
               Nitrosomonadaceae; Nitrosomonas.
   REFERENCE   1  (bases 1 to 2661057)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Arp,D., Klotz,M.,
               Norton,J., Stein,L., Sayavedra-Soto,L., Hommes,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of the choromosome of Nitrosomonas eutropha C91
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2661057)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (14-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2661057)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Arp,D., Klotz,M.,
               Norton,J., Stein,L., Sayavedra-Soto,L., Hommes,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000450.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634486
               Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu)
               Contacts: Dan Arp (arpd@bcc.orst.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
6613	6688	+	76	114330036	Neut_R0001	-	^{01 Gly tRNA}
123441	123514	+	74	114330036	Neut_R0002	-	^{19 Cys tRNA}
123540	123628	+	89	114330036	Neut_R0003	-	^{15 Leu tRNA}
210148	210233	-	86	114330036	Neut_R0004	-	^{15 Leu tRNA}
231716	233245	+	1530	114330036	Neut_R0005	-	16S ribosomal RNA
233340	233416	+	77	114330036	Neut_R0006	-	^{14 Ile tRNA}
233419	233494	+	76	114330036	Neut_R0007	-	^{02 Ala tRNA}
233643	236526	+	2884	114330036	Neut_R0008	-	23S ribosomal RNA
236593	236705	+	113	114330036	Neut_R0009	-	5S ribosomal RNA
309741	309817	+	77	114330036	Neut_R0010	-	^{16 Met tRNA}
330649	330719	+	71	114330036	Neut_R0011	-	^{01 Gly tRNA}
391066	391141	-	76	114330036	Neut_R0012	-	^{04 Glu tRNA}
391167	391242	-	76	114330036	Neut_R0013	-	^{02 Ala tRNA}
594166	594241	+	76	114330036	Neut_R0014	-	^{12 Thr tRNA}
597363	597467	-	105	114330036	Neut_R0015	-	SRP RNA; RNA component of signal recognition particle
625149	625225	+	77	114330036	Neut_R0016	-	^{13 Val tRNA}
669807	669882	+	76	114330036	Neut_R0017	-	^{13 Val tRNA}
669942	670018	+	77	114330036	Neut_R0018	-	^{06 Asp tRNA}
841072	841148	-	77	114330036	Neut_R0019	-	^{03 Pro tRNA}
948549	948633	+	85	114330036	Neut_R0020	-	^{15 Leu tRNA}
972317	972392	-	76	114330036	Neut_R0021	-	^{10 Lys tRNA}
1155347	1155422	+	76	114330036	Neut_R0022	-	^{12 Thr tRNA}
1165765	1165855	-	91	114330036	Neut_R0023	-	^{08 Ser tRNA}
1179145	1179219	+	75	114330036	Neut_R0024	-	^{05 Gln tRNA}
1286397	1286472	-	76	114330036	Neut_R0025	-	^{11 Arg tRNA}
1329101	1329176	-	76	114330036	Neut_R0026	-	^{09 His tRNA}
1329228	1329304	-	77	114330036	Neut_R0027	-	^{11 Arg tRNA}
1329349	1329425	-	77	114330036	Neut_R0028	-	^{03 Pro tRNA}
1531916	1531992	+	77	114330036	Neut_R0029	-	^{16 Met tRNA}
1569828	1569903	-	76	114330036	Neut_R0030	-	^{07 Asn tRNA}
1654953	1655040	-	88	114330036	Neut_R0031	-	^{08 Ser tRNA}
1680127	1680213	-	87	114330036	Neut_R0032	-	^{15 Leu tRNA}
1702900	1702984	+	85	114330036	Neut_R0033	-	^{15 Leu tRNA}
1716702	1716777	+	76	114330036	Neut_R0034	-	^{16 Met tRNA}
1770642	1770717	-	76	114330036	Neut_R0035	-	^{11 Arg tRNA}
1856062	1856154	+	93	114330036	Neut_R0036	-	^{08 Ser tRNA}
1862463	1862537	+	75	114330036	Neut_R0037	-	^{13 Val tRNA}
1911730	1911805	-	76	114330036	Neut_R0038	-	^{20 Trp tRNA}
1913105	1913179	-	75	114330036	Neut_R0039	-	^{12 Thr tRNA}
1913215	1913288	-	74	114330036	Neut_R0040	-	^{01 Gly tRNA}
1913401	1913485	-	85	114330036	Neut_R0041	-	^{18 Tyr tRNA}
2193671	2193747	+	77	114330036	Neut_R0042	-	^{11 Arg tRNA}
2193816	2193891	+	76	114330036	Neut_R0043	-	^{17 Phe tRNA}
2205667	2205759	-	93	114330036	Neut_R0044	-	^{08 Ser tRNA}
2450231	2450307	-	77	114330036	Neut_R0045	-	^{03 Pro tRNA}
2634560	2634920	-	361	114330036	Neut_R0046	-	tmRNA
2649398	2649634	+	237	114330036	Neut_R0047	-	RNA component of RNaseP