Геном прокариот/Материалы:NC 008531

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008531            2038396 bp    DNA     circular BCT 31-OCT-2006
   DEFINITION  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete
               genome.
   ACCESSION   NC_008531
   VERSION     NC_008531.1  GI:116617174
   KEYWORDS    .
   SOURCE      Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
     ORGANISM  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
               Bacteria; Firmicutes; Lactobacillales; Leuconostoc.
   REFERENCE   1  (bases 1 to 2038396)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 2038396)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2038396)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000414.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662187
               Source DNA and bacteria available from Fred Breidt
               (breidt@ncsu.edu)
               Bacteria also available from ATCC: ATCC 8293
               Contacts: Fred Breidt (breidt@ncsu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)
               URL -- http://www.fidelitysystems.com  Project Information
               available at: http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
22669	24217	+	1549	116617174	LEUM_r0019	-	16S ribosomal RNA
24330	24402	+	73	116617174	LEUM_t0020	-	^{02 Ala tRNA}
24593	27506	+	2914	116617174	LEUM_r0021	-	23S ribosomal RNA
27624	27712	+	89	116617174	LEUM_r0022	-	5S ribosomal RNA
27762	27855	+	94	116617174	LEUM_t0023	-	^{08 Ser tRNA}
27857	27929	+	73	116617174	LEUM_t0024	-	^{13 Val tRNA}
27970	28042	+	73	116617174	LEUM_t0025	-	^{12 Thr tRNA}
28051	28122	+	72	116617174	LEUM_t0026	-	^{01 Gly tRNA}
28128	28211	+	84	116617174	LEUM_t0027	-	^{15 Leu tRNA}
28217	28290	+	74	116617174	LEUM_t0028	-	^{11 Arg tRNA}
28359	28432	+	74	116617174	LEUM_t0029	-	^{03 Pro tRNA}
28461	28534	+	74	116617174	LEUM_t0030	-	^{16 Met tRNA}
28548	28621	+	74	116617174	LEUM_t0031	-	^{16 Met tRNA}
28646	28735	+	90	116617174	LEUM_t0032	-	^{08 Ser tRNA}
28767	28840	+	74	116617174	LEUM_t0033	-	^{16 Met tRNA}
28843	28916	+	74	116617174	LEUM_t0034	-	^{06 Asp tRNA}
28937	29009	+	73	116617174	LEUM_t0035	-	^{17 Phe tRNA}
29037	29107	+	71	116617174	LEUM_t0036	-	^{01 Gly tRNA}
29140	29213	+	74	116617174	LEUM_t0037	-	^{14 Ile tRNA}
47149	47220	-	72	116617174	LEUM_t0056	-	^{07 Asn tRNA}
114832	114907	-	76	116617174	LEUM_t0132	-	^{10 Lys tRNA}
148404	149952	+	1549	116617174	LEUM_r0163	-	16S ribosomal RNA
150065	150137	+	73	116617174	LEUM_t0164	-	^{02 Ala tRNA}
150328	153241	+	2914	116617174	LEUM_r0165	-	23S ribosomal RNA
153359	153447	+	89	116617174	LEUM_r0166	-	5S ribosomal RNA
153497	153590	+	94	116617174	LEUM_t0167	-	^{08 Ser tRNA}
153592	153664	+	73	116617174	LEUM_t0168	-	^{13 Val tRNA}
153705	153777	+	73	116617174	LEUM_t0169	-	^{12 Thr tRNA}
153786	153857	+	72	116617174	LEUM_t0170	-	^{01 Gly tRNA}
153863	153946	+	84	116617174	LEUM_t0171	-	^{15 Leu tRNA}
153952	154025	+	74	116617174	LEUM_t0172	-	^{11 Arg tRNA}
154094	154167	+	74	116617174	LEUM_t0173	-	^{03 Pro tRNA}
154196	154269	+	74	116617174	LEUM_t0174	-	^{16 Met tRNA}
154283	154356	+	74	116617174	LEUM_t0175	-	^{16 Met tRNA}
154381	154470	+	90	116617174	LEUM_t0176	-	^{08 Ser tRNA}
154502	154575	+	74	116617174	LEUM_t0177	-	^{16 Met tRNA}
154578	154651	+	74	116617174	LEUM_t0178	-	^{06 Asp tRNA}
154672	154744	+	73	116617174	LEUM_t0179	-	^{17 Phe tRNA}
154772	154842	+	71	116617174	LEUM_t0180	-	^{01 Gly tRNA}
154875	154948	+	74	116617174	LEUM_t0181	-	^{14 Ile tRNA}
197140	197222	+	83	116617174	LEUM_t0235	-	^{18 Tyr tRNA}
197260	197334	+	75	116617174	LEUM_t0236	-	^{05 Gln tRNA}
197424	197511	-	88	116617174	LEUM_t0237	-	^{15 Leu tRNA}
205620	205691	-	72	116617174	LEUM_t0245	-	Xaa tRNA
247526	247601	+	76	116617174	LEUM_t0291	-	^{10 Lys tRNA}
273252	273609	+	358	116617174	LEUM_s0320	-	tmRNA
297748	297834	+	87	116617174	LEUM_t0342	-	^{15 Leu tRNA}
318416	318487	+	72	116617174	LEUM_t0365	-	^{04 Glu tRNA}
367415	367487	+	73	116617174	LEUM_t0407	-	^{07 Asn tRNA}
367594	367666	+	73	116617174	LEUM_t0408	-	^{07 Asn tRNA}
367671	367746	+	76	116617174	LEUM_t0409	-	^{12 Thr tRNA}
370545	370616	-	72	116617174	LEUM_t0413	-	^{04 Glu tRNA}
381019	381090	-	72	116617174	LEUM_t0423	-	^{05 Gln tRNA}
477234	477307	+	74	116617174	LEUM_t0514	-	^{10 Lys tRNA}
500070	500140	+	71	116617174	LEUM_t0535	-	^{19 Cys tRNA}
589604	589679	-	76	116617174	LEUM_t0622	-	^{11 Arg tRNA}
621520	621853	+	334	116617174	LEUM_s0654	-	RNA_RNaseP_classB
626478	626552	+	75	116617174	LEUM_t0659	-	^{04 Glu tRNA}
722634	722707	+	74	116617174	LEUM_t0744	-	^{16 Met tRNA}
1311944	1312018	+	75	116617174	LEUM_t1320	-	^{04 Glu tRNA}
1319646	1319719	-	74	116617174	LEUM_t1333	-	^{11 Arg tRNA}
1325872	1325960	-	89	116617174	LEUM_t1341	-	^{08 Ser tRNA}
1461108	1461191	+	84	116617174	LEUM_t1465	-	^{15 Leu tRNA}
1666982	1667053	-	72	116617174	LEUM_t1693	-	^{07 Asn tRNA}
1677110	1677198	-	89	116617174	LEUM_r1705	-	5S ribosomal RNA
1677316	1680229	-	2914	116617174	LEUM_r1706	-	23S ribosomal RNA
1680420	1680492	-	73	116617174	LEUM_t1707	-	^{02 Ala tRNA}
1680605	1682153	-	1549	116617174	LEUM_r1708	-	16S ribosomal RNA
1801982	1802065	-	84	116617174	LEUM_t1826	-	^{15 Leu tRNA}
1802089	1802164	-	76	116617174	LEUM_t1827	-	^{09 His tRNA}
1802167	1802240	-	74	116617174	LEUM_t1828	-	^{20 Trp tRNA}
1802336	1802412	-	77	116617174	LEUM_t1829	-	^{06 Asp tRNA}
1802415	1802487	-	73	116617174	LEUM_t1830	-	^{13 Val tRNA}
1802489	1802582	-	94	116617174	LEUM_t1831	-	^{08 Ser tRNA}
1802632	1802720	-	89	116617174	LEUM_r1832	-	5S ribosomal RNA
1802838	1805751	-	2914	116617174	LEUM_r1833	-	23S ribosomal RNA
1805942	1806014	-	73	116617174	LEUM_t1834	-	^{02 Ala tRNA}
1806127	1807675	-	1549	116617174	LEUM_r1835	-	16S ribosomal RNA
1834566	1834638	-	73	116617174	LEUM_t1858	-	^{12 Thr tRNA}
1834714	1834795	-	82	116617174	LEUM_t1859	-	^{15 Leu tRNA}
1839615	1839689	-	75	116617174	LEUM_t1865	-	^{04 Glu tRNA}
1882699	1882786	-	88	116617174	LEUM_t1914	-	^{08 Ser tRNA}
1893697	1893771	-	75	116617174	LEUM_t1924	-	^{05 Gln tRNA}
1893809	1893891	-	83	116617174	LEUM_t1925	-	^{18 Tyr tRNA}
2022929	2022999	+	71	116617174	LEUM_t2056	-	^{14 Ile tRNA}