Геном прокариот/Материалы:NC 008576
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Базовый уровень статей |
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LOCUS NC_008576 4719581 bp DNA circular BCT 22-NOV-2006
DEFINITION Magnetococcus sp. MC-1, complete genome.
ACCESSION NC_008576
VERSION NC_008576.1 GI:117923318
KEYWORDS .
SOURCE Magnetococcus sp. MC-1
ORGANISM Magnetococcus sp. MC-1
Bacteria; Proteobacteria; Magnetococcus.
REFERENCE 1 (bases 1 to 4719581)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Kiss,H., Goodwin,L.A., Brettin,T., Bruce,D., Han,C., Tapia,R.,
Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Magnetococcus sp. MC-1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4719581)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4719581)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Kiss,H., Goodwin,L.A., Brettin,T., Bruce,D., Han,C., Tapia,R.,
Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (20-SEP-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000471.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2351493
Source DNA and bacteria available from Dennis Bazylinski
(dbazylin@iastate.edu)
Contacts: Dennis Bazylinski (dbazylin@iastate.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 92618 | 92691 | - | 74 | 117923318 | Mmc1_R0001 | - | 01 Gly tRNA |
| 262431 | 262507 | - | 77 | 117923318 | Mmc1_R0002 | - | 11 Arg tRNA |
| 275258 | 276753 | + | 1496 | 117923318 | Mmc1_R0003 | - | 16S ribosomal RNA |
| 276952 | 279725 | + | 2774 | 117923318 | Mmc1_R0004 | - | 23S ribosomal RNA |
| 279929 | 280043 | + | 115 | 117923318 | Mmc1_R0005 | - | 5S ribosomal RNA |
| 874188 | 874274 | + | 87 | 117923318 | Mmc1_R0006 | - | 15 Leu tRNA |
| 942164 | 942471 | + | 308 | 117923318 | Mmc1_R0007 | - | RNA component of RNaseP |
| 1004834 | 1004909 | - | 76 | 117923318 | Mmc1_R0008 | - | 16 Met tRNA |
| 1023627 | 1023701 | + | 75 | 117923318 | Mmc1_R0009 | - | 05 Gln tRNA |
| 1036450 | 1036534 | + | 85 | 117923318 | Mmc1_R0010 | - | 18 Tyr tRNA |
| 1036549 | 1036622 | + | 74 | 117923318 | Mmc1_R0011 | - | 01 Gly tRNA |
| 1036709 | 1036783 | + | 75 | 117923318 | Mmc1_R0012 | - | 12 Thr tRNA |
| 1038525 | 1038600 | + | 76 | 117923318 | Mmc1_R0013 | - | 20 Trp tRNA |
| 1072599 | 1072674 | + | 76 | 117923318 | Mmc1_R0014 | - | 07 Asn tRNA |
| 1314597 | 1314686 | + | 90 | 117923318 | Mmc1_R0015 | - | 08 Ser tRNA |
| 1409916 | 1409991 | + | 76 | 117923318 | Mmc1_R0016 | - | 02 Ala tRNA |
| 1522615 | 1522980 | + | 366 | 117923318 | Mmc1_R0017 | - | tmRNA |
| 1805619 | 1805695 | + | 77 | 117923318 | Mmc1_R0018 | - | 16 Met tRNA |
| 2020096 | 2020171 | + | 76 | 117923318 | Mmc1_R0019 | - | 04 Glu tRNA |
| 2148163 | 2148271 | - | 109 | 117923318 | Mmc1_R0020 | - | SRP RNA; RNA component of signal recognition particle |
| 2333735 | 2333809 | - | 75 | 117923318 | Mmc1_R0021 | - | 01 Gly tRNA |
| 2333837 | 2333913 | - | 77 | 117923318 | Mmc1_R0022 | - | 19 Cys tRNA |
| 2333922 | 2333996 | - | 75 | 117923318 | Mmc1_R0023 | - | 01 Gly tRNA |
| 2378938 | 2379013 | - | 76 | 117923318 | Mmc1_R0024 | - | 12 Thr tRNA |
| 2379343 | 2379417 | + | 75 | 117923318 | Mmc1_R0025 | - | 13 Val tRNA |
| 2414541 | 2414627 | - | 87 | 117923318 | Mmc1_R0026 | - | 15 Leu tRNA |
| 2416637 | 2416723 | + | 87 | 117923318 | Mmc1_R0027 | - | 15 Leu tRNA |
| 2416959 | 2417034 | - | 76 | 117923318 | Mmc1_R0028 | - | 17 Phe tRNA |
| 2562382 | 2562457 | - | 76 | 117923318 | Mmc1_R0029 | - | 02 Ala tRNA |
| 2736415 | 2736490 | - | 76 | 117923318 | Mmc1_R0030 | - | 04 Glu tRNA |
| 2825553 | 2825643 | - | 91 | 117923318 | Mmc1_R0031 | - | 08 Ser tRNA |
| 2830086 | 2830175 | - | 90 | 117923318 | Mmc1_R0032 | - | 08 Ser tRNA |
| 2830428 | 2830504 | + | 77 | 117923318 | Mmc1_R0033 | - | 14 Ile tRNA |
| 2830527 | 2830602 | + | 76 | 117923318 | Mmc1_R0034 | - | 02 Ala tRNA |
| 3369531 | 3369607 | - | 77 | 117923318 | Mmc1_R0035 | - | 16 Met tRNA |
| 3369626 | 3369740 | - | 115 | 117923318 | Mmc1_R0036 | - | 5S ribosomal RNA |
| 3369944 | 3372717 | - | 2774 | 117923318 | Mmc1_R0037 | - | 23S ribosomal RNA |
| 3372916 | 3374412 | - | 1497 | 117923318 | Mmc1_R0038 | - | 16S ribosomal RNA |
| 3618969 | 3619045 | - | 77 | 117923318 | Mmc1_R0039 | - | 16 Met tRNA |
| 3619064 | 3619178 | - | 115 | 117923318 | Mmc1_R0040 | - | 5S ribosomal RNA |
| 3619382 | 3622155 | - | 2774 | 117923318 | Mmc1_R0041 | - | 23S ribosomal RNA |
| 3622354 | 3623850 | - | 1497 | 117923318 | Mmc1_R0042 | - | 16S ribosomal RNA |
| 3823561 | 3823636 | - | 76 | 117923318 | Mmc1_R0043 | - | 10 Lys tRNA |
| 3888762 | 3888838 | + | 77 | 117923318 | Mmc1_R0044 | - | 03 Pro tRNA |
| 3933758 | 3933834 | + | 77 | 117923318 | Mmc1_R0045 | - | 11 Arg tRNA |
| 4023953 | 4024037 | - | 85 | 117923318 | Mmc1_R0046 | - | 15 Leu tRNA |
| 4089776 | 4089851 | - | 76 | 117923318 | Mmc1_R0047 | - | 12 Thr tRNA |
| 4176937 | 4177013 | + | 77 | 117923318 | Mmc1_R0048 | - | 03 Pro tRNA |
| 4249602 | 4249676 | + | 75 | 117923318 | Mmc1_R0049 | - | 13 Val tRNA |
| 4389040 | 4389129 | + | 90 | 117923318 | Mmc1_R0050 | - | 08 Ser tRNA |
| 4573620 | 4573696 | - | 77 | 117923318 | Mmc1_R0051 | - | 06 Asp tRNA |
| 4573867 | 4573942 | - | 76 | 117923318 | Mmc1_R0052 | - | 13 Val tRNA |
| 4580547 | 4580631 | - | 85 | 117923318 | Mmc1_R0053 | - | 15 Leu tRNA |
| 4580717 | 4580791 | - | 75 | 117923318 | Mmc1_R0054 | - | 09 His tRNA |
| 4580977 | 4581053 | - | 77 | 117923318 | Mmc1_R0055 | - | 11 Arg tRNA |
| 4581097 | 4581173 | - | 77 | 117923318 | Mmc1_R0056 | - | 03 Pro tRNA |
| 4595064 | 4595140 | + | 77 | 117923318 | Mmc1_R0057 | - | 11 Arg tRNA |