Геном прокариот/Материалы:NC 008825

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008825            4044195 bp    DNA     circular BCT 27-FEB-2007
   DEFINITION  Methylibium petroleiphilum PM1, complete genome.
   ACCESSION   NC_008825
   VERSION     NC_008825.1  GI:124265193
   KEYWORDS    .
   SOURCE      Methylibium petroleiphilum PM1
     ORGANISM  Methylibium petroleiphilum PM1
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Methylibium.
   REFERENCE   1  (bases 1 to 4044195)
     AUTHORS   Kane,S.R., Chakicherla,A.Y., Chain,P.S., Schmidt,R., Shin,M.W.,
               Legler,T.C., Scow,K.M., Larimer,F.W., Lucas,S.M., Richardson,P.M.
               and Hristova,K.R.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Whole-Genome Analysis of Methyl tert-Butyl Ether (MTBE)-Degrading
               Beta-Proteobacterium Methylibium petroleiphilum PM1
     JOURNAL   J. Bacteriol. 189 (5), 1931-1945 (2007)
      PUBMED   17158667
   REFERENCE   2  (bases 1 to 4044195)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L. and Richardson,P.
     TITLE     Direct Submission
     JOURNAL   Submitted (19-JAN-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   REFERENCE   3  (bases 1 to 4044195)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (18-DEC-2002) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000555.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3436553
               Source DNA and bacteria available from Staci Kane (kane11@llnl.gov)
               Contacts: Staci Kane (kane11@llnl.gov)
                         Krassimira R. Hristova (krhristova@ucdavis.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL,JGI-PGF and JGI-LLNL
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
148607	148683	+	77	124265193	Mpe_AR0028	-	^{03 Pro tRNA}
209062	209152	-	91	124265193	Mpe_AR0029	-	^{08 Ser tRNA}
225810	225885	-	76	124265193	Mpe_AR0030	-	^{09 His tRNA}
227996	228071	-	76	124265193	Mpe_AR0031	-	^{13 Val tRNA}
259322	259406	+	85	124265193	Mpe_AR0032	-	^{15 Leu tRNA}
352302	353832	+	1531	124265193	Mpe_A0326a	-	16S ribosomal RNA
354393	357269	+	2877	124265193	Mpe_A0326b	-	23S ribosomal RNA
357384	357499	+	116	124265193	Mpe_A0326c	-	5S ribosomal RNA
436925	437001	-	77	124265193	Mpe_AR0033	-	^{06 Asp tRNA}
437048	437123	-	76	124265193	Mpe_AR0034	-	^{04 Glu tRNA}
437182	437257	-	76	124265193	Mpe_AR0035	-	^{02 Ala tRNA}
549475	549549	-	75	124265193	Mpe_AR0036	-	^{13 Val tRNA}
707118	707191	-	74	124265193	Mpe_AR0037	-	^{01 Gly tRNA}
747881	747974	-	94	124265193	Mpe_AR0038	-	^{08 Ser tRNA}
999370	999460	-	91	124265193	Mpe_AR0039	-	^{08 Ser tRNA}
1091801	1091876	+	76	124265193	Mpe_AR0040	-	^{12 Thr tRNA}
1171543	1171632	+	90	124265193	Mpe_AR0041	-	^{08 Ser tRNA}
1295213	1295288	+	76	124265193	Mpe_AR0042	-	^{02 Ala tRNA}
1321553	1321629	-	77	124265193	Mpe_AR0043	-	^{11 Arg tRNA}
1566338	1566414	-	77	124265193	Mpe_AR0044	-	^{05 Gln tRNA}
1670868	1670944	-	77	124265193	Mpe_AR0045	-	^{16 Met tRNA}
1764822	1764898	-	77	124265193	Mpe_AR0046	-	^{16 Met tRNA}
1800382	1800457	-	76	124265193	Mpe_AR0047	-	^{20 Trp tRNA}
1801719	1801793	-	75	124265193	Mpe_AR0048	-	^{12 Thr tRNA}
1801895	1801968	-	74	124265193	Mpe_AR0049	-	^{01 Gly tRNA}
1802065	1802150	-	86	124265193	Mpe_AR0050	-	^{18 Tyr tRNA}
1887386	1887461	-	76	124265193	Mpe_AR0051	-	^{11 Arg tRNA}
2477041	2477116	+	76	124265193	Mpe_AR0052	-	^{17 Phe tRNA}
2531273	2531349	+	77	124265193	Mpe_AR0053	-	^{14 Ile tRNA}
2531361	2531436	+	76	124265193	Mpe_AR0054	-	^{02 Ala tRNA}
2726461	2726537	-	77	124265193	Mpe_AR0055	-	^{03 Pro tRNA}
2760626	2760702	-	77	124265193	Mpe_AR0056	-	^{16 Met tRNA}
3067431	3067506	+	76	124265193	Mpe_AR0057	-	^{12 Thr tRNA}
3341502	3341576	-	75	124265193	Mpe_AR0058	-	^{11 Arg tRNA}
3385845	3385929	-	85	124265193	Mpe_AR0059	-	^{15 Leu tRNA}
3573437	3573523	+	87	124265193	Mpe_AR0060	-	^{15 Leu tRNA}
3579618	3579693	+	76	124265193	Mpe_AR0061	-	^{01 Gly tRNA}
3579779	3579852	+	74	124265193	Mpe_AR0062	-	^{19 Cys tRNA}
3631806	3631881	+	76	124265193	Mpe_AR0063	-	^{10 Lys tRNA}
3631920	3631995	+	76	124265193	Mpe_AR0064	-	^{10 Lys tRNA}
3659536	3659612	+	77	124265193	Mpe_AR0065	-	^{03 Pro tRNA}
3664884	3664960	+	77	124265193	Mpe_AR0066	-	^{11 Arg tRNA}
3690121	3690205	+	85	124265193	Mpe_AR0067	-	^{15 Leu tRNA}
3787121	3787196	-	76	124265193	Mpe_AR0068	-	^{07 Asn tRNA}
3882870	3882946	+	77	124265193	Mpe_AR0069	-	^{13 Val tRNA}