Геном прокариот/Материалы:NC 009077
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Базовый уровень статей |
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LOCUS NC_009077 6048425 bp DNA circular BCT 01-MAR-2007
DEFINITION Mycobacterium sp. JLS, complete genome.
ACCESSION NC_009077
VERSION NC_009077.1 GI:126432613
KEYWORDS .
SOURCE Mycobacterium sp. JLS
ORGANISM Mycobacterium sp. JLS
Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
Corynebacterineae; Mycobacteriaceae; Mycobacterium.
REFERENCE 1 (bases 1 to 6048425)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C.D.,
Anderson,A.J., Sims,R.C. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Mycobacterium sp. JLS
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6048425)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C.D.,
Anderson,A.J., Sims,R.C. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFERENCE 3 (bases 1 to 6048425)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-APR-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000580.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000378
Source DNA and bacteria available from Charles Miller
(cdmiller@biology.usu.edu)
Contacts: Charles Miller (cdmiller@biology.usu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Additional Note: There is a 21kb repeat at 1513668-1544927 in the
final assembly that possibly sometimes inserts itself at location
5440327 in the chromosome.
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 11963 | 12036 | + | 74 | 126432613 | Mjls_R0001 | - | 14 Ile tRNA |
| 12198 | 12273 | + | 76 | 126432613 | Mjls_R0002 | - | 02 Ala tRNA |
| 25626 | 25708 | + | 83 | 126432613 | Mjls_R0003 | - | 15 Leu tRNA |
| 461457 | 461530 | - | 74 | 126432613 | Mjls_R0004 | - | 01 Gly tRNA |
| 819391 | 819476 | + | 86 | 126432613 | Mjls_R0005 | - | 18 Tyr tRNA |
| 1029962 | 1030034 | + | 73 | 126432613 | Mjls_R0006 | - | 12 Thr tRNA |
| 1030066 | 1030139 | + | 74 | 126432613 | Mjls_R0007 | - | 16 Met tRNA |
| 1031979 | 1032054 | + | 76 | 126432613 | Mjls_R0008 | - | 20 Trp tRNA |
| 1580692 | 1580768 | + | 77 | 126432613 | Mjls_R0009 | - | 16 Met tRNA |
| 1691136 | 1691500 | + | 365 | 126432613 | Mjls_R0010 | - | |
| 1804201 | 1804273 | + | 73 | 126432613 | Mjls_R0011 | - | 02 Ala tRNA |
| 2005329 | 2005400 | + | 72 | 126432613 | Mjls_R0012 | - | 05 Gln tRNA |
| 2005463 | 2005535 | + | 73 | 126432613 | Mjls_R0013 | - | 04 Glu tRNA |
| 2369681 | 2369755 | - | 75 | 126432613 | Mjls_R0014 | - | 13 Val tRNA |
| 2369769 | 2369842 | - | 74 | 126432613 | Mjls_R0015 | - | 19 Cys tRNA |
| 2369866 | 2369941 | - | 76 | 126432613 | Mjls_R0016 | - | 01 Gly tRNA |
| 2370192 | 2370266 | + | 75 | 126432613 | Mjls_R0017 | - | 13 Val tRNA |
| 3060447 | 3060520 | - | 74 | 126432613 | Mjls_R0018 | - | 03 Pro tRNA |
| 3093385 | 3093498 | - | 114 | 126432613 | Mjls_R0019 | - | 5S ribosomal RNA |
| 3093615 | 3096761 | - | 3147 | 126432613 | Mjls_R0020 | - | 23S ribosomal RNA |
| 3097193 | 3098707 | - | 1515 | 126432613 | Mjls_R0021 | - | 16S ribosomal RNA |
| 3149630 | 3149700 | - | 71 | 126432613 | Mjls_R0022 | - | 19 Cys tRNA |
| 3173250 | 3173326 | + | 77 | 126432613 | Mjls_R0023 | - | 15 Leu tRNA |
| 3329732 | 3329817 | + | 86 | 126432613 | Mjls_R0024 | - | 15 Leu tRNA |
| 3343635 | 3343714 | + | 80 | 126432613 | Mjls_R0025 | - | 10 Lys tRNA |
| 3510686 | 3511037 | - | 352 | 126432613 | Mjls_R0026 | - | |
| 3532848 | 3532919 | - | 72 | 126432613 | Mjls_R0027 | - | 13 Val tRNA |
| 3609627 | 3609703 | - | 77 | 126432613 | Mjls_R0028 | - | 16 Met tRNA |
| 3624910 | 3624982 | - | 73 | 126432613 | Mjls_R0029 | - | 07 Asn tRNA |
| 3780037 | 3780113 | - | 77 | 126432613 | Mjls_R0030 | - | 03 Pro tRNA |
| 3780254 | 3780327 | + | 74 | 126432613 | Mjls_R0031 | - | 01 Gly tRNA |
| 3833896 | 3833968 | + | 73 | 126432613 | Mjls_R0032 | - | 11 Arg tRNA |
| 3854455 | 3854530 | + | 76 | 126432613 | Mjls_R0033 | - | 09 His tRNA |
| 3855965 | 3856040 | + | 76 | 126432613 | Mjls_R0034 | - | 10 Lys tRNA |
| 4046705 | 4046788 | - | 84 | 126432613 | Mjls_R0035 | - | 15 Leu tRNA |
| 4081140 | 4081253 | - | 114 | 126432613 | Mjls_R0036 | - | 5S ribosomal RNA |
| 4081378 | 4084517 | - | 3140 | 126432613 | Mjls_R0037 | - | 23S ribosomal RNA |
| 4084949 | 4086463 | - | 1515 | 126432613 | Mjls_R0038 | - | 16S ribosomal RNA |
| 4114021 | 4114096 | + | 76 | 126432613 | Mjls_R0039 | - | 11 Arg tRNA |
| 4676639 | 4676712 | - | 74 | 126432613 | Mjls_R0040 | - | 15 Leu tRNA |
| 4861113 | 4861187 | + | 75 | 126432613 | Mjls_R0041 | - | 05 Gln tRNA |
| 4900312 | 4900384 | - | 73 | 126432613 | Mjls_R0042 | - | 02 Ala tRNA |
| 5005474 | 5005546 | + | 73 | 126432613 | Mjls_R0043 | - | 11 Arg tRNA |
| 5134452 | 5134528 | - | 77 | 126432613 | Mjls_R0044 | - | 17 Phe tRNA |
| 5134571 | 5134647 | - | 77 | 126432613 | Mjls_R0045 | - | 06 Asp tRNA |
| 5134681 | 5134753 | - | 73 | 126432613 | Mjls_R0046 | - | 04 Glu tRNA |
| 5134874 | 5134949 | + | 76 | 126432613 | Mjls_R0047 | - | 10 Lys tRNA |
| 5216333 | 5216407 | + | 75 | 126432613 | Mjls_R0048 | - | 12 Thr tRNA |
| 5427633 | 5427705 | - | 73 | 126432613 | Mjls_R0049 | - | 12 Thr tRNA |
| 5463650 | 5463723 | + | 74 | 126432613 | Mjls_R0050 | - | 03 Pro tRNA |
| 5529822 | 5529914 | - | 93 | 126432613 | Mjls_R0051 | - | SRP RNA; RNA component of signal recognition particle |
| 5529988 | 5530072 | + | 85 | 126432613 | Mjls_R0052 | - | 08 Ser tRNA |
| 5594557 | 5594647 | - | 91 | 126432613 | Mjls_R0053 | - | 08 Ser tRNA |
| 5612742 | 5612814 | - | 73 | 126432613 | Mjls_R0054 | - | 11 Arg tRNA |
| 5612853 | 5612944 | - | 92 | 126432613 | Mjls_R0055 | - | 08 Ser tRNA |
| 5616359 | 5616445 | - | 87 | 126432613 | Mjls_R0056 | - | 08 Ser tRNA |
| 5846540 | 5846634 | + | 95 | 126432613 | Mjls_R0057 | - | Sec tRNA |