Геном прокариот/Материалы:NC 009253

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009253            3608104 bp    DNA     circular BCT 31-MAR-2007
   DEFINITION  Desulfotomaculum reducens MI-1, complete genome.
   ACCESSION   NC_009253
   VERSION     NC_009253.1  GI:134297881
   KEYWORDS    .
   SOURCE      Desulfotomaculum reducens MI-1
     ORGANISM  Desulfotomaculum reducens MI-1
               Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae;
               Desulfotomaculum.
   REFERENCE   1  (bases 1 to 3608104)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Desulfotomaculum reducens MI-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3608104)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (30-MAR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3608104)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000612.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000266
               Source DNA and bacteria available from Bradley M. Tebo
               (tebo@ebs.ogi.edu)
               Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu)
                    Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
10048	11659	+	1612	134297881	Dred_R0001	-	16S ribosomal RNA
11738	11814	+	77	134297881	Dred_R0002	-	^{14 Ile tRNA}
11832	11907	+	76	134297881	Dred_R0003	-	^{02 Ala tRNA}
12068	15659	+	3592	134297881	Dred_R0004	-	23S ribosomal RNA
15847	15963	+	117	134297881	Dred_R0005	-	5S ribosomal RNA
24602	24691	+	90	134297881	Dred_R0006	-	^{08 Ser tRNA}
24708	24801	+	94	134297881	Dred_R0007	-	^{08 Ser tRNA}
25698	25774	+	77	134297881	Dred_R0008	-	^{11 Arg tRNA}
25832	25908	+	77	134297881	Dred_R0009	-	^{11 Arg tRNA}
25960	26036	+	77	134297881	Dred_R0010	-	^{11 Arg tRNA}
26520	26611	+	92	134297881	Dred_R0011	-	^{08 Ser tRNA}
49815	49906	+	92	134297881	Dred_R0012	-	^{08 Ser tRNA}
50041	50141	+	101	134297881	Dred_R0013	-	SRP RNA; RNA component of signal recognition particle
184639	186250	+	1612	134297881	Dred_R0014	-	16S ribosomal RNA
186329	186405	+	77	134297881	Dred_R0015	-	^{14 Ile tRNA}
186423	186498	+	76	134297881	Dred_R0016	-	^{02 Ala tRNA}
186659	190250	+	3592	134297881	Dred_R0017	-	23S ribosomal RNA
190424	190540	+	117	134297881	Dred_R0018	-	5S ribosomal RNA
190548	190622	+	75	134297881	Dred_R0019	-	^{07 Asn tRNA}
190811	190927	+	117	134297881	Dred_R0020	-	5S ribosomal RNA
190935	191009	+	75	134297881	Dred_R0021	-	^{07 Asn tRNA}
213648	213723	+	76	134297881	Dred_R0022	-	^{12 Thr tRNA}
213733	213818	+	86	134297881	Dred_R0023	-	^{18 Tyr tRNA}
213886	213961	+	76	134297881	Dred_R0024	-	^{16 Met tRNA}
213965	214040	+	76	134297881	Dred_R0025	-	^{12 Thr tRNA}
214049	214125	+	77	134297881	Dred_R0026	-	^{16 Met tRNA}
361113	361317	+	205	134297881	Dred_R0027	-	5S ribosomal RNA
392461	392536	+	76	134297881	Dred_R0028	-	^{05 Gln tRNA}
392546	392621	+	76	134297881	Dred_R0029	-	^{10 Lys tRNA}
406914	406986	+	73	134297881	Dred_R0030	-	^{10 Lys tRNA}
441378	442989	+	1612	134297881	Dred_R0031	-	16S ribosomal RNA
443221	446812	+	3592	134297881	Dred_R0032	-	23S ribosomal RNA
447000	447116	+	117	134297881	Dred_R0033	-	5S ribosomal RNA
502748	502823	-	76	134297881	Dred_R0034	-	^{16 Met tRNA}
531315	531391	+	77	134297881	Dred_R0035	-	^{06 Asp tRNA}
531400	531475	+	76	134297881	Dred_R0036	-	^{17 Phe tRNA}
531492	531566	+	75	134297881	Dred_R0037	-	^{01 Gly tRNA}
531579	531652	+	74	134297881	Dred_R0038	-	^{19 Cys tRNA}
533450	533525	+	76	134297881	Dred_R0039	-	^{17 Phe tRNA}
533543	533617	+	75	134297881	Dred_R0040	-	^{01 Gly tRNA}
533630	533704	+	75	134297881	Dred_R0041	-	^{19 Cys tRNA}
534781	534855	+	75	134297881	Dred_R0042	-	^{01 Gly tRNA}
534865	534941	+	77	134297881	Dred_R0043	-	^{06 Asp tRNA}
535013	535099	+	87	134297881	Dred_R0044	-	^{15 Leu tRNA}
1258506	1258582	+	77	134297881	Dred_R0045	-	^{03 Pro tRNA}
1308162	1308232	+	71	134297881	Dred_R0046	-	Xaa tRNA
1332694	1334305	+	1612	134297881	Dred_R0047	-	16S ribosomal RNA
1334536	1338127	+	3592	134297881	Dred_R0048	-	23S ribosomal RNA
1338315	1338431	+	117	134297881	Dred_R0049	-	5S ribosomal RNA
1345371	1346982	+	1612	134297881	Dred_R0050	-	16S ribosomal RNA
1347398	1350989	+	3592	134297881	Dred_R0051	-	23S ribosomal RNA
1351177	1351293	+	117	134297881	Dred_R0052	-	5S ribosomal RNA
1380461	1380767	+	307	134297881	Dred_R0053	-	RNase P
1380879	1380954	+	76	134297881	Dred_R0054	-	^{02 Ala tRNA}
1721624	1721708	-	85	134297881	Dred_R0055	-	^{15 Leu tRNA}
1733002	1733087	-	86	134297881	Dred_R0056	-	^{03 Pro tRNA}
1746823	1746899	+	77	134297881	Dred_R0057	-	^{13 Val tRNA}
1964347	1964422	+	76	134297881	Dred_R0058	-	^{20 Trp tRNA}
2219505	2219709	-	205	134297881	Dred_R0059	-	5S ribosomal RNA
2219897	2223488	-	3592	134297881	Dred_R0060	-	23S ribosomal RNA
2223904	2225515	-	1612	134297881	Dred_R0061	-	16S ribosomal RNA
2296928	2297004	-	77	134297881	Dred_R0062	-	^{03 Pro tRNA}
2319835	2319911	+	77	134297881	Dred_R0063	-	^{03 Pro tRNA}
2349174	2349249	+	76	134297881	Dred_R0064	-	^{04 Glu tRNA}
2349256	2349341	+	86	134297881	Dred_R0065	-	^{18 Tyr tRNA}
2349345	2349419	+	75	134297881	Dred_R0066	-	^{05 Gln tRNA}
2350024	2350110	+	87	134297881	Dred_R0067	-	^{15 Leu tRNA}
2350260	2350346	+	87	134297881	Dred_R0068	-	^{15 Leu tRNA}
2373130	2373227	-	98	134297881	Dred_R0069	-	Sec tRNA
2374959	2375033	-	75	134297881	Dred_R0070	-	^{01 Gly tRNA}
2500132	2500218	+	87	134297881	Dred_R0071	-	^{15 Leu tRNA}
2679493	2679568	-	76	134297881	Dred_R0072	-	^{13 Val tRNA}
2679579	2679654	-	76	134297881	Dred_R0073	-	^{04 Glu tRNA}
2679683	2679757	-	75	134297881	Dred_R0074	-	^{16 Met tRNA}
2679764	2679838	-	75	134297881	Dred_R0075	-	^{07 Asn tRNA}
2747153	2747269	-	117	134297881	Dred_R0076	-	5S ribosomal RNA
2747457	2751048	-	3592	134297881	Dred_R0077	-	23S ribosomal RNA
2751280	2752891	-	1612	134297881	Dred_R0078	-	16S ribosomal RNA
2793540	2793624	-	85	134297881	Dred_R0079	-	^{15 Leu tRNA}
2793635	2793710	-	76	134297881	Dred_R0080	-	^{10 Lys tRNA}
2793719	2793793	-	75	134297881	Dred_R0081	-	^{05 Gln tRNA}
2793813	2793889	-	77	134297881	Dred_R0082	-	^{09 His tRNA}
2807849	2807924	+	76	134297881	Dred_R0083	-	^{16 Met tRNA}
2808591	2808667	+	77	134297881	Dred_R0084	-	^{11 Arg tRNA}
2907452	2907525	-	74	134297881	Dred_R0085	-	^{01 Gly tRNA}
3032244	3032318	-	75	134297881	Dred_R0086	-	^{11 Arg tRNA}
3165251	3165326	-	76	134297881	Dred_R0087	-	^{12 Thr tRNA}
3165433	3165508	-	76	134297881	Dred_R0088	-	^{12 Thr tRNA}
3165513	3165588	-	76	134297881	Dred_R0089	-	^{13 Val tRNA}
3166112	3166187	+	76	134297881	Dred_R0090	-	^{13 Val tRNA}
3166197	3166273	+	77	134297881	Dred_R0091	-	^{06 Asp tRNA}
3190893	3191009	-	117	134297881	Dred_R0092	-	5S ribosomal RNA
3191197	3194788	-	3592	134297881	Dred_R0093	-	23S ribosomal RNA
3195019	3196630	-	1612	134297881	Dred_R0094	-	16S ribosomal RNA
3241871	3242217	-	347	134297881	Dred_R0095	-	tmRNA
3580478	3580552	-	75	134297881	Dred_R0096	-	^{01 Gly tRNA}
3580614	3580689	-	76	134297881	Dred_R0097	-	^{04 Glu tRNA}
3580705	3580780	-	76	134297881	Dred_R0098	-	^{10 Lys tRNA}
3580816	3580891	-	76	134297881	Dred_R0099	-	^{04 Glu tRNA}
3580906	3580981	-	76	134297881	Dred_R0100	-	^{10 Lys tRNA}