Геном прокариот/Материалы:NC 009380

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009380            5183331 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Salinispora tropica CNB-440, complete genome.
   ACCESSION   NC_009380
   VERSION     NC_009380.1  GI:145592566
   KEYWORDS    .
   SOURCE      Salinispora tropica CNB-440
     ORGANISM  Salinispora tropica CNB-440
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Micromonosporineae; Micromonosporaceae; Salinispora.
   REFERENCE   1  (bases 1 to 5183331)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Sun,H., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Jensen,P., Moore,B.,
               Udwary,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Salinispora tropica CNB-440
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5183331)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-APR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5183331)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Sun,H., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Jensen,P., Moore,B.,
               Udwary,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (10-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000667.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001585
               Source DNA and bacteria available from Paul Jensen
               (pjensen@ucsd.edu)
               Contacts: Paul Jensen (pjensen@ucsd.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
13654	13730	+	77	145592566	Strop_R0001	-	^{14 Ile tRNA}
14629	14704	+	76	145592566	Strop_R0002	-	^{02 Ala tRNA}
48840	48925	-	86	145592566	Strop_R0003	-	^{15 Leu tRNA}
67524	67597	+	74	145592566	Strop_R0004	-	^{01 Gly tRNA}
202576	204103	+	1528	145592566	Strop_R0005	-	16S ribosomal RNA
204506	207613	+	3108	145592566	Strop_R0006	-	23S ribosomal RNA
207695	207823	+	129	145592566	Strop_R0007	-	5S ribosomal RNA
234086	234172	+	87	145592566	Strop_R0008	-	^{08 Ser tRNA}
241999	242083	-	85	145592566	Strop_R0009	-	^{08 Ser tRNA}
470769	470852	+	84	145592566	Strop_R0010	-	^{18 Tyr tRNA}
631297	631372	-	76	145592566	Strop_R0011	-	^{11 Arg tRNA}
655708	655803	+	96	145592566	Strop_R0012	-	Sec tRNA
830937	831013	+	77	145592566	Strop_R0013	-	^{02 Ala tRNA}
875429	875500	+	72	145592566	Strop_R0014	-	^{05 Gln tRNA}
1012577	1012660	+	84	145592566	Strop_R0015	-	^{15 Leu tRNA}
1103754	1104126	+	373	145592566	Strop_R0016	-	tmRNA
1106829	1106904	+	76	145592566	Strop_R0017	-	^{02 Ala tRNA}
1183092	1183166	+	75	145592566	Strop_R0018	-	^{10 Lys tRNA}
1260367	1260453	-	87	145592566	Strop_R0019	-	^{15 Leu tRNA}
1270726	1270801	+	76	145592566	Strop_R0020	-	^{09 His tRNA}
1274262	1274337	+	76	145592566	Strop_R0021	-	^{10 Lys tRNA}
1418924	1418995	+	72	145592566	Strop_R0022	-	^{05 Gln tRNA}
1419095	1419167	+	73	145592566	Strop_R0023	-	^{04 Glu tRNA}
1419332	1419404	+	73	145592566	Strop_R0024	-	^{04 Glu tRNA}
1788599	1788671	+	73	145592566	Strop_R0025	-	^{01 Gly tRNA}
1788706	1788776	+	71	145592566	Strop_R0026	-	^{19 Cys tRNA}
1788789	1788863	+	75	145592566	Strop_R0027	-	^{13 Val tRNA}
1789375	1789447	+	73	145592566	Strop_R0028	-	^{01 Gly tRNA}
1789486	1789557	+	72	145592566	Strop_R0029	-	^{13 Val tRNA}
1822362	1822436	+	75	145592566	Strop_R0030	-	^{13 Val tRNA}
2172798	2174325	+	1528	145592566	Strop_R0031	-	16S ribosomal RNA
2174728	2177835	+	3108	145592566	Strop_R0032	-	23S ribosomal RNA
2177917	2178045	+	129	145592566	Strop_R0033	-	5S ribosomal RNA
2206283	2206356	+	74	145592566	Strop_R0034	-	^{03 Pro tRNA}
3325222	3325305	-	84	145592566	Strop_R0035	-	^{15 Leu tRNA}
3618390	3618466	+	77	145592566	Strop_R0036	-	^{15 Leu tRNA}
3847829	3848184	-	356	145592566	Strop_R0037	-	RNA component of RNaseP
3864145	3864219	-	75	145592566	Strop_R0038	-	^{13 Val tRNA}
3921289	3921365	-	77	145592566	Strop_R0039	-	^{16 Met tRNA}
3925076	3925148	-	73	145592566	Strop_R0040	-	^{07 Asn tRNA}
4009222	4009350	-	129	145592566	Strop_R0041	-	5S ribosomal RNA
4009431	4012538	-	3108	145592566	Strop_R0042	-	23S ribosomal RNA
4012942	4014469	-	1528	145592566	Strop_R0043	-	16S ribosomal RNA
4020768	4020841	-	74	145592566	Strop_R0044	-	^{03 Pro tRNA}
4021118	4021191	+	74	145592566	Strop_R0045	-	^{01 Gly tRNA}
4078954	4079026	+	73	145592566	Strop_R0046	-	^{11 Arg tRNA}
4190586	4190660	+	75	145592566	Strop_R0047	-	^{11 Arg tRNA}
4269850	4269923	-	74	145592566	Strop_R0048	-	^{16 Met tRNA}
4270801	4270874	-	74	145592566	Strop_R0049	-	^{16 Met tRNA}
4493369	4493441	-	73	145592566	Strop_R0050	-	^{20 Trp tRNA}
4494820	4494892	-	73	145592566	Strop_R0051	-	^{16 Met tRNA}
4494917	4494989	-	73	145592566	Strop_R0052	-	^{12 Thr tRNA}
4565214	4565287	-	74	145592566	Strop_R0053	-	^{12 Thr tRNA}
4687456	4687546	+	91	145592566	Strop_R0054	-	^{08 Ser tRNA}
4687582	4687657	+	76	145592566	Strop_R0055	-	^{11 Arg tRNA}
4785175	4785251	-	77	145592566	Strop_R0056	-	^{12 Thr tRNA}
4936175	4936251	+	77	145592566	Strop_R0057	-	^{03 Pro tRNA}
5030668	5030741	-	74	145592566	Strop_R0058	-	^{17 Phe tRNA}
5030841	5030917	-	77	145592566	Strop_R0059	-	^{06 Asp tRNA}
5030944	5031016	-	73	145592566	Strop_R0060	-	^{04 Glu tRNA}
5062286	5062372	-	87	145592566	Strop_R0061	-	^{08 Ser tRNA}