Геном прокариот/Материалы:NC 009445
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Базовый уровень статей |
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LOCUS NC_009445 7456587 bp DNA circular BCT 14-AUG-2007
DEFINITION Bradyrhizobium sp. ORS278, complete genome.
ACCESSION NC_009445
VERSION NC_009445.1 GI:146337175
KEYWORDS complete genome; PRO.
SOURCE Bradyrhizobium sp. ORS278
ORGANISM Bradyrhizobium sp. ORS278
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Bradyrhizobiaceae; Bradyrhizobium.
REFERENCE 1 (bases 1 to 7456587)
AUTHORS Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytrin,E.,
Avarre,J.C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G.,
Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A.,
Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C.,
Franck,W.L., Chang,W.S., Saunders,E., Bruce,D., Richardson,P.,
Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D.,
Vermeglio,A., Medigue,C. and Sadowsky,M.
TITLE The Rhizobial Nod Factors are not Universally Required for Legume
Nodulation
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7456587)
AUTHORS Jaubert,M., Lavergne,J., Fardoux,J., Hannibal,L., Vuillet,L.,
Adriano,J.M., Bouyer,P., Pignol,D., Giraud,E. and Vermeglio,A.
TITLE A singular bacteriophytochrome acquired by lateral gene transfer
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 7456587)
AUTHORS Genoscope.
CONSRTM 1:Genoscope, UMR 8030, France 2:LSTM, France 3:Dep SWC ; and
BioTechnology Institute, USA 4:CEA/Cadarache,DEVM,UMR 6191, France
5:NCSB , USA 6:DOE , USA 7:DOE , USA 8:Universite Lyon1, France;
UMR5557, France; IFR 41, France.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2006) Genoscope - Centre National de Sequencage :
BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
- Web : www.genoscope.cns.fr)
REFERENCE 4 (bases 1 to 7456587)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CU234118.
Annotation data relative to BLAST similarities, COG assignations,
enzymatic function prediction (PRIAM software), TMHMM and SignalP
predictions, and synteny results (Syntonizer software) are
available in FrankiaScope database via the MaGe annotation system
http://www.genoscope.cns.fr/agc/mage/frankia.
Each annotation includes a confidence level as follow: 1 : Function
experimentally demonstrated in the studied organism 2a : Function
of homologous gene experimentally demonstrated in an other organism
2b : Function of strongly homologous gene
3 : Function proposed based on presence of conserved amino acid
motif, structural feature or limited homology
4 : Homologs of previously reported genes of unknown function 5 :
No homology to any previously reported sequences 6 : Doubtful CDS
7 : Gene remnant.
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 116406 | 116481 | + | 76 | 146337175 | BRADOtRNA1 | - | 02 Ala tRNA |
| 143183 | 143269 | - | 87 | 146337175 | BRADOtRNA50 | - | 15 Leu tRNA |
| 292712 | 292787 | + | 76 | 146337175 | BRADOtRNA2 | - | 02 Ala tRNA |
| 311530 | 311605 | - | 76 | 146337175 | BRADOtRNA49 | - | 12 Thr tRNA |
| 332058 | 332132 | + | 75 | 146337175 | BRADOtRNA3 | - | 01 Gly tRNA |
| 449051 | 449140 | + | 90 | 146337175 | BRADOtRNA4 | - | 08 Ser tRNA |
| 495267 | 495343 | - | 77 | 146337175 | BRADOtRNA48 | - | 11 Arg tRNA |
| 689746 | 689822 | + | 77 | 146337175 | BRADOtRNA5 | - | 11 Arg tRNA |
| 808247 | 808344 | + | 98 | 146337175 | BRADOmisc_RNA_1 | - | SRP_bact |
| 831114 | 831190 | + | 77 | 146337175 | BRADOtRNA6 | - | 11 Arg tRNA |
| 898436 | 898509 | + | 74 | 146337175 | BRADOmisc_RNA_7 | - | Intron_gpII |
| 1315633 | 1315709 | + | 77 | 146337175 | BRADOtRNA7 | - | 09 His tRNA |
| 1418511 | 1418587 | - | 77 | 146337175 | BRADOtRNA47 | - | Xaa tRNA |
| 1459003 | 1459077 | + | 75 | 146337175 | BRADOtRNA8 | - | 04 Glu tRNA |
| 1575020 | 1575094 | - | 75 | 146337175 | BRADOtRNA46 | - | 13 Val tRNA |
| 1991182 | 1991255 | + | 74 | 146337175 | BRADOmisc_RNA_8 | - | Intron_gpII |
| 2193505 | 2193581 | + | 77 | 146337175 | BRADOtRNA9 | - | 03 Pro tRNA |
| 2313556 | 2313630 | + | 75 | 146337175 | BRADOtRNA10 | - | 05 Gln tRNA |
| 3139393 | 3139479 | - | 87 | 146337175 | BRADOtRNA45 | - | 15 Leu tRNA |
| 3203705 | 3203779 | - | 75 | 146337175 | BRADOtRNA44 | - | 12 Thr tRNA |
| 3206841 | 3206926 | + | 86 | 146337175 | BRADOtRNA11 | - | 18 Tyr tRNA |
| 3211570 | 3211643 | + | 74 | 146337175 | BRADOtRNA12 | - | 01 Gly tRNA |
| 3244585 | 3244660 | + | 76 | 146337175 | BRADOtRNA13 | - | 20 Trp tRNA |
| 3421313 | 3421389 | - | 77 | 146337175 | BRADOtRNA43 | - | 11 Arg tRNA |
| 3464225 | 3464309 | + | 85 | 146337175 | BRADOtRNA14 | - | 15 Leu tRNA |
| 3789846 | 3789920 | + | 75 | 146337175 | BRADOtRNA15 | - | 04 Glu tRNA |
| 3841026 | 3841102 | + | 77 | 146337175 | BRADOtRNA16 | - | 03 Pro tRNA |
| 3878669 | 3878743 | - | 75 | 146337175 | BRADOtRNA42 | - | 08 Ser tRNA |
| 3918329 | 3918404 | - | 76 | 146337175 | BRADOtRNA41 | - | 10 Lys tRNA |
| 3989099 | 3989188 | - | 90 | 146337175 | BRADOtRNA40 | - | 08 Ser tRNA |
| 4061385 | 4061459 | + | 75 | 146337175 | BRADOtRNA17 | - | 07 Asn tRNA |
| 4072398 | 4072471 | - | 74 | 146337175 | BRADOtRNA39 | - | 19 Cys tRNA |
| 4107680 | 4107756 | + | 77 | 146337175 | BRADOtRNA18 | - | 11 Arg tRNA |
| 4388856 | 4388932 | - | 77 | 146337175 | BRADOtRNA38 | - | 06 Asp tRNA |
| 4394377 | 4394453 | - | 77 | 146337175 | BRADOtRNA37 | - | 13 Val tRNA |
| 4401555 | 4401639 | - | 85 | 146337175 | BRADOtRNA36 | - | 15 Leu tRNA |
| 4618540 | 4618617 | - | 78 | 146337175 | BRADOtRNA35 | - | 03 Pro tRNA |
| 4682839 | 4682932 | - | 94 | 146337175 | BRADOtRNA34 | - | 08 Ser tRNA |
| 4849563 | 4849636 | + | 74 | 146337175 | BRADOtRNA19 | - | 05 Gln tRNA |
| 5049703 | 5049825 | - | 123 | 146337175 | BRADO_5S_2 | - | ribosomal RNA 5S |
| 5049923 | 5052563 | - | 2641 | 146337175 | BRADO_23S_2 | - | ribosomal RNA 23S |
| 5053288 | 5053363 | - | 76 | 146337175 | BRADOtRNA33 | - | 02 Ala tRNA |
| 5053511 | 5053587 | - | 77 | 146337175 | BRADOtRNA32 | - | 14 Ile tRNA |
| 5053832 | 5055324 | - | 1493 | 146337175 | BRADO_16S_2 | - | ribosomal RNA 16S |
| 5111599 | 5111792 | - | 194 | 146337175 | BRADOmisc_RNA_2 | - | Cobalamin |
| 5178592 | 5178698 | + | 107 | 146337175 | BRADOmisc_RNA_3 | - | gcvT |
| 5178702 | 5178792 | + | 91 | 146337175 | BRADOmisc_RNA_4 | - | gcvT |
| 5708280 | 5708355 | - | 76 | 146337175 | BRADOtRNA31 | - | 10 Lys tRNA |
| 5866943 | 5867305 | + | 363 | 146337175 | BRADOmisc_RNA_6 | - | RNaseP_bact_a |
| 5912070 | 5912166 | + | 97 | 146337175 | BRADOmisc_RNA_10 | - | THI |
| 6059839 | 6059914 | + | 76 | 146337175 | BRADOtRNA20 | - | 16 Met tRNA |
| 6111805 | 6111881 | - | 77 | 146337175 | BRADOtRNA30 | - | 16 Met tRNA |
| 6258242 | 6258436 | - | 195 | 146337175 | BRADOmisc_RNA_9 | - | RFN |
| 6448675 | 6448749 | - | 75 | 146337175 | BRADOtRNA29 | - | 13 Val tRNA |
| 6671825 | 6671901 | - | 77 | 146337175 | BRADOtRNA28 | - | 16 Met tRNA |
| 6690866 | 6690988 | - | 123 | 146337175 | BRADO_5S_1 | - | ribosomal RNA 5S |
| 6691081 | 6693721 | - | 2641 | 146337175 | BRADO_23S_1 | - | ribosomal RNA 23S |
| 6694446 | 6694521 | - | 76 | 146337175 | BRADOtRNA27 | - | 02 Ala tRNA |
| 6694669 | 6694745 | - | 77 | 146337175 | BRADOtRNA26 | - | 14 Ile tRNA |
| 6694990 | 6696482 | - | 1493 | 146337175 | BRADO_16S_1 | - | ribosomal RNA 16S |
| 6797711 | 6797795 | + | 85 | 146337175 | BRADOtRNA21 | - | 15 Leu tRNA |
| 6887044 | 6887119 | - | 76 | 146337175 | BRADOtRNA25 | - | 17 Phe tRNA |
| 6894920 | 6894994 | + | 75 | 146337175 | BRADOtRNA22 | - | 12 Thr tRNA |
| 7022035 | 7022108 | - | 74 | 146337175 | BRADOtRNA24 | - | 01 Gly tRNA |
| 7058665 | 7058767 | - | 103 | 146337175 | BRADOmisc_RNA_5 | - | ykkC-yxkD |
| 7235113 | 7235202 | - | 90 | 146337175 | BRADOtRNA23 | - | 08 Ser tRNA |