Геном прокариот/Материалы:NC 009454
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Базовый уровень статей |
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LOCUS NC_009454 3025375 bp DNA circular BCT 08-AUG-2007
DEFINITION Pelotomaculum thermopropionicum SI, complete genome.
ACCESSION NC_009454
VERSION NC_009454.1 GI:147676335
KEYWORDS .
SOURCE Pelotomaculum thermopropionicum SI
ORGANISM Pelotomaculum thermopropionicum SI
Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae;
Pelotomaculum.
REFERENCE 1
AUTHORS Kosaka,T., Uchiyama,T., Ishii,S., Enoki,M., Imachi,H., Kamagata,Y.,
Ohashi,A., Harada,H., Ikenaga,H. and Watanabe,K.
TITLE Reconstruction and regulation of the central catabolic pathway in
the thermophilic propionate-oxidizing syntroph Pelotomaculum
thermopropionicum
JOURNAL J. Bacteriol. 188 (1), 202-210 (2006)
PUBMED 16352836
REFERENCE 2
AUTHORS Kosaka,T., Kato,S., Shimoyama,T., Ishii,S., Asami,H. and
Watanabe,K.
TITLE The complete genome sequence of Pelotomaculum thermopropionicum
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3025375)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (15-MAY-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 4 (bases 1 to 3025375)
AUTHORS Watanabe,K. and Kosaka,T.
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2007) Kazuya Watanabe, Marine Biotechnology
Institute Co., Ltd.; 3-75-1 Heita, Kamaishi, Iwate 026-0001, Japan
(E-mail:kazuya.watanabe@mbio.jp, Tel:81-193-26-6581,
Fax:81-193-26-6592)
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AP009389.
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 18890 | 18979 | + | 90 | 147676335 | PTH_t001 | - | Anticodon: TGA |
| 19006 | 19100 | + | 95 | 147676335 | PTH_t002 | - | Anticodon: GCT |
| 26218 | 26294 | + | 77 | 147676335 | PTH_t003 | - | Anticodon: ACG |
| 26309 | 26385 | + | 77 | 147676335 | PTH_t004 | - | Anticodon: CCT |
| 27909 | 28002 | + | 94 | 147676335 | PTH_t005 | - | Anticodon: CGA |
| 53250 | 53339 | + | 90 | 147676335 | PTH_t006 | - | Anticodon: GGA |
| 265400 | 266925 | + | 1526 | 147676335 | PTH_r001 | - | 16S ribosomal RNA |
| 267134 | 267210 | + | 77 | 147676335 | PTH_t007 | - | Anticodon: GAT |
| 267320 | 267394 | + | 75 | 147676335 | PTH_t008 | - | Anticodon: TGC |
| 267447 | 268042 | + | 596 | 147676335 | PTH_r002 | - | 23S ribosomal RNA |
| 268148 | 268774 | + | 627 | 147676335 | PTH_r002 | - | 23S ribosomal RNA |
| 269201 | 270929 | + | 1729 | 147676335 | PTH_r002 | - | 23S ribosomal RNA |
| 271060 | 271179 | + | 120 | 147676335 | PTH_r003 | - | 5S ribosomal RNA |
| 288112 | 288186 | + | 75 | 147676335 | PTH_t009 | - | Anticodon: GTT |
| 307354 | 307429 | + | 76 | 147676335 | PTH_t010 | - | Anticodon: TGT |
| 307540 | 307624 | + | 85 | 147676335 | PTH_t011 | - | Anticodon: GTA |
| 307649 | 307724 | + | 76 | 147676335 | PTH_t012 | - | Anticodon: CAT |
| 307729 | 307804 | + | 76 | 147676335 | PTH_t013 | - | Anticodon: GGT |
| 307823 | 307899 | + | 77 | 147676335 | PTH_t014 | - | Anticodon: CAT |
| 758580 | 758654 | + | 75 | 147676335 | PTH_t015 | - | Anticodon: CCG |
| 799597 | 799673 | + | 77 | 147676335 | PTH_t016 | - | Anticodon: GTG |
| 799681 | 799756 | + | 76 | 147676335 | PTH_t017 | - | Anticodon: TTG |
| 799786 | 799861 | + | 76 | 147676335 | PTH_t018 | - | Anticodon: TTT |
| 800040 | 800124 | + | 85 | 147676335 | PTH_t019 | - | Anticodon: TAG |
| 807311 | 807387 | - | 77 | 147676335 | PTH_t020 | - | Anticodon: TCT |
| 807395 | 807468 | - | 74 | 147676335 | PTH_t021 | - | Anticodon: TCC |
| 844002 | 844076 | + | 75 | 147676335 | PTH_t022 | - | Anticodon: GGC |
| 927558 | 927632 | + | 75 | 147676335 | PTH_t023 | - | Anticodon: GTT |
| 927639 | 927713 | + | 75 | 147676335 | PTH_t024 | - | Anticodon: CAT |
| 927794 | 927869 | + | 76 | 147676335 | PTH_t025 | - | Anticodon: TTC |
| 927874 | 927949 | + | 76 | 147676335 | PTH_t026 | - | Anticodon: TAC |
| 958044 | 958119 | - | 76 | 147676335 | PTH_t027 | - | Anticodon: CGC |
| 969369 | 969445 | + | 77 | 147676335 | PTH_t028 | - | Anticodon: GTC |
| 969453 | 969528 | + | 76 | 147676335 | PTH_t029 | - | Anticodon: GAA |
| 969584 | 969658 | + | 75 | 147676335 | PTH_t030 | - | Anticodon: GCC |
| 969667 | 969741 | + | 75 | 147676335 | PTH_t031 | - | Anticodon: GCA |
| 993839 | 993932 | - | 94 | 147676335 | PTH_t032 | - | Anticodon: TCA |
| 1016024 | 1016111 | - | 88 | 147676335 | PTH_t033 | - | Anticodon: CAG |
| 1017272 | 1017347 | - | 76 | 147676335 | PTH_t034 | - | Anticodon: CTT |
| 1017378 | 1017452 | - | 75 | 147676335 | PTH_t035 | - | Anticodon: TTG |
| 1017467 | 1017544 | - | 78 | 147676335 | PTH_t036 | - | Anticodon: TGG |
| 1049070 | 1050595 | + | 1526 | 147676335 | PTH_r004 | - | 16S ribosomal RNA |
| 1050854 | 1051450 | + | 597 | 147676335 | PTH_r005 | - | 23S ribosomal RNA |
| 1051555 | 1052180 | + | 626 | 147676335 | PTH_r005 | - | 23S ribosomal RNA |
| 1052608 | 1054336 | + | 1729 | 147676335 | PTH_r005 | - | 23S ribosomal RNA |
| 1054467 | 1054587 | + | 121 | 147676335 | PTH_r006 | - | 5S ribosomal RNA |
| 1443171 | 1443246 | + | 76 | 147676335 | PTH_t037 | - | Anticodon: CCA |
| 1450227 | 1450303 | + | 77 | 147676335 | PTH_t038 | - | Anticodon: CCA |
| 1475245 | 1475322 | - | 78 | 147676335 | PTH_t039 | - | Anticodon: CGG |
| 1525667 | 1525744 | - | 78 | 147676335 | PTH_t040 | - | Anticodon: GGG |
| 1525786 | 1525861 | - | 76 | 147676335 | PTH_t041 | - | Anticodon: GGC |
| 1525874 | 1525948 | - | 75 | 147676335 | PTH_t042 | - | Anticodon: GCC |
| 1975289 | 1975377 | + | 89 | 147676335 | PTH_t043 | - | Anticodon: TAA |
| 2082473 | 2082547 | - | 75 | 147676335 | PTH_t044 | - | Anticodon: GAC |
| 2100667 | 2100749 | + | 83 | 147676335 | PTH_t045 | - | Anticodon: GAG |
| 2244231 | 2244319 | + | 89 | 147676335 | PTH_t046 | - | Anticodon: CAA |
| 2692921 | 2692995 | + | 75 | 147676335 | PTH_t047 | - | Anticodon: CAC |
| 2708988 | 2709062 | - | 75 | 147676335 | PTH_t048 | - | Anticodon: CGT |
| 2985439 | 2985513 | - | 75 | 147676335 | PTH_t049 | - | Anticodon: CCC |
| 2985709 | 2985784 | - | 76 | 147676335 | PTH_t050 | - | Anticodon: TTC |
| 2985828 | 2985903 | - | 76 | 147676335 | PTH_t051 | - | Anticodon: TTT |