Геном прокариот/Материалы:NC 009486
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Базовый уровень статей |
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LOCUS NC_009486 1823511 bp DNA circular BCT 26-JUN-2007
DEFINITION Thermotoga petrophila RKU-1, complete genome.
ACCESSION NC_009486
VERSION NC_009486.1 GI:148269145
KEYWORDS .
SOURCE Thermotoga petrophila RKU-1
ORGANISM Thermotoga petrophila RKU-1
Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.
REFERENCE 1 (bases 1 to 1823511)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Mikhailova,N., Noll,K. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Thermotoga petrophila RKU-1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1823511)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1823511)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Mikhailova,N., Noll,K. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAY-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000702.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4002277
Source DNA and bacteria available from Kenneth Noll
(kenneth.noll@uconn.edu)
Contacts: Kenneth Noll (kenneth.noll@uconn.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 68664 | 68750 | - | 87 | 148269145 | Tpet_R0001 | - | 15 Leu tRNA |
| 99548 | 99636 | - | 89 | 148269145 | Tpet_R0002 | - | 08 Ser tRNA |
| 102919 | 103005 | - | 87 | 148269145 | Tpet_R0003 | - | 15 Leu tRNA |
| 173828 | 173901 | - | 74 | 148269145 | Tpet_R0004 | - | 05 Gln tRNA |
| 195043 | 195322 | - | 280 | 148269145 | Tpet_R0005 | - | RNase P class A |
| 321978 | 322053 | - | 76 | 148269145 | Tpet_R0006 | - | 12 Thr tRNA |
| 403455 | 403808 | - | 354 | 148269145 | Tpet_R0007 | - | tmRNA |
| 424450 | 424525 | + | 76 | 148269145 | Tpet_R0008 | - | 10 Lys tRNA |
| 424531 | 424617 | + | 87 | 148269145 | Tpet_R0009 | - | 15 Leu tRNA |
| 424629 | 424703 | + | 75 | 148269145 | Tpet_R0010 | - | 01 Gly tRNA |
| 432763 | 432851 | + | 89 | 148269145 | Tpet_R0011 | - | 08 Ser tRNA |
| 460884 | 460959 | - | 76 | 148269145 | Tpet_R0012 | - | 20 Trp tRNA |
| 461139 | 461225 | - | 87 | 148269145 | Tpet_R0013 | - | 18 Tyr tRNA |
| 461235 | 461310 | - | 76 | 148269145 | Tpet_R0014 | - | 12 Thr tRNA |
| 461334 | 461406 | - | 73 | 148269145 | Tpet_R0015 | - | 16 Met tRNA |
| 461513 | 461588 | - | 76 | 148269145 | Tpet_R0016 | - | 16 Met tRNA |
| 515521 | 515594 | + | 74 | 148269145 | Tpet_R0017 | - | 05 Gln tRNA |
| 589246 | 589322 | - | 77 | 148269145 | Tpet_R0018 | - | 12 Thr tRNA |
| 735317 | 735393 | - | 77 | 148269145 | Tpet_R0019 | - | 11 Arg tRNA |
| 735407 | 735496 | - | 90 | 148269145 | Tpet_R0020 | - | 08 Ser tRNA |
| 737048 | 737123 | + | 76 | 148269145 | Tpet_R0021 | - | 01 Gly tRNA |
| 737135 | 737211 | + | 77 | 148269145 | Tpet_R0022 | - | 11 Arg tRNA |
| 737222 | 737297 | + | 76 | 148269145 | Tpet_R0023 | - | 09 His tRNA |
| 737303 | 737379 | + | 77 | 148269145 | Tpet_R0024 | - | 11 Arg tRNA |
| 741146 | 741221 | - | 76 | 148269145 | Tpet_R0025 | - | 02 Ala tRNA |
| 749558 | 749685 | - | 128 | 148269145 | Tpet_R0026 | - | 5S ribosomal RNA |
| 749724 | 750701 | - | 978 | 148269145 | Tpet_R0027 | - | 23S ribosomal RNA |
| 751403 | 753441 | - | 2039 | 148269145 | Tpet_R0027 | - | 23S ribosomal RNA |
| 753482 | 753557 | - | 76 | 148269145 | Tpet_R0028 | - | 02 Ala tRNA |
| 753563 | 753639 | - | 77 | 148269145 | Tpet_R0029 | - | 14 Ile tRNA |
| 753680 | 755242 | - | 1563 | 148269145 | Tpet_R0030 | - | 16S ribosomal RNA |
| 793592 | 793668 | - | 77 | 148269145 | Tpet_R0031 | - | 03 Pro tRNA |
| 1075434 | 1075511 | + | 78 | 148269145 | Tpet_R0032 | - | 06 Asp tRNA |
| 1094542 | 1094632 | - | 91 | 148269145 | Tpet_R0033 | - | 08 Ser tRNA |
| 1103791 | 1103866 | + | 76 | 148269145 | Tpet_R0034 | - | 04 Glu tRNA |
| 1147459 | 1147535 | - | 77 | 148269145 | Tpet_R0035 | - | 03 Pro tRNA |
| 1147701 | 1147775 | + | 75 | 148269145 | Tpet_R0036 | - | 04 Glu tRNA |
| 1223912 | 1223987 | - | 76 | 148269145 | Tpet_R0037 | - | 10 Lys tRNA |
| 1224009 | 1224083 | - | 75 | 148269145 | Tpet_R0038 | - | 11 Arg tRNA |
| 1224090 | 1224165 | - | 76 | 148269145 | Tpet_R0039 | - | 02 Ala tRNA |
| 1224355 | 1224430 | - | 76 | 148269145 | Tpet_R0040 | - | 17 Phe tRNA |
| 1224443 | 1224517 | - | 75 | 148269145 | Tpet_R0041 | - | 13 Val tRNA |
| 1264554 | 1264629 | + | 76 | 148269145 | Tpet_R0042 | - | 11 Arg tRNA |
| 1369546 | 1369620 | + | 75 | 148269145 | Tpet_R0043 | - | 13 Val tRNA |
| 1388139 | 1388224 | - | 86 | 148269145 | Tpet_R0044 | - | 15 Leu tRNA |
| 1388363 | 1388437 | + | 75 | 148269145 | Tpet_R0045 | - | 13 Val tRNA |
| 1399812 | 1399888 | - | 77 | 148269145 | Tpet_R0046 | - | 19 Cys tRNA |
| 1406546 | 1406635 | + | 90 | 148269145 | Tpet_R0047 | - | 15 Leu tRNA |
| 1429800 | 1429875 | - | 76 | 148269145 | Tpet_R0048 | - | 01 Gly tRNA |
| 1429981 | 1430057 | + | 77 | 148269145 | Tpet_R0049 | - | 16 Met tRNA |
| 1517019 | 1517095 | - | 77 | 148269145 | Tpet_R0050 | - | 03 Pro tRNA |
| 1563423 | 1563498 | - | 76 | 148269145 | Tpet_R0051 | - | 07 Asn tRNA |
| 1631652 | 1631758 | + | 107 | 148269145 | Tpet_R0052 | - | SRP RNA; RNA component of signal recognition particle |