Геном прокариот/Материалы:NC 009633

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009633            4929566 bp    DNA     circular BCT 03-JUL-2007
   DEFINITION  Alkaliphilus metalliredigens QYMF, complete genome.
   ACCESSION   NC_009633
   VERSION     NC_009633.1  GI:150387853
   KEYWORDS    .
   SOURCE      Alkaliphilus metalliredigens QYMF
     ORGANISM  Alkaliphilus metalliredigens QYMF
               Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
               Alkaliphilus.
   REFERENCE   1  (bases 1 to 4929566)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Ye,Q., Zhou,J.,
               Fields,M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Alkaliphilus metalliredigens QYMF
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4929566)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4929566)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Ye,Q., Zhou,J.,
               Fields,M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (13-JUN-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000724.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634496
               Source DNA and bacteria available from Matthew Fields
               (matthew.fields@erc.montana.edu)
               Contacts: Matthew Fields (matthew.fields@erc.montana.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
11329	12849	+	1521	150387853	Amet_R0001	-	16S ribosomal RNA
13209	16143	+	2935	150387853	Amet_R0002	-	23S ribosomal RNA
16271	16386	+	116	150387853	Amet_R0003	-	5S ribosomal RNA
22384	23904	+	1521	150387853	Amet_R0004	-	16S ribosomal RNA
24268	27202	+	2935	150387853	Amet_R0005	-	23S ribosomal RNA
27463	27578	+	116	150387853	Amet_R0006	-	5S ribosomal RNA
38852	38928	+	77	150387853	Amet_R0007	-	^{11 Arg tRNA}
39483	39570	+	88	150387853	Amet_R0008	-	^{08 Ser tRNA}
39705	39805	+	101	150387853	Amet_R0009	-	SRP RNA; RNA component of signal recognition particle
48874	50394	+	1521	150387853	Amet_R0010	-	16S ribosomal RNA
50461	50536	+	76	150387853	Amet_R0011	-	^{02 Ala tRNA}
50776	53710	+	2935	150387853	Amet_R0012	-	23S ribosomal RNA
53891	54006	+	116	150387853	Amet_R0013	-	5S ribosomal RNA
54401	55921	+	1521	150387853	Amet_R0014	-	16S ribosomal RNA
56089	56165	+	77	150387853	Amet_R0015	-	^{14 Ile tRNA}
56325	59259	+	2935	150387853	Amet_R0016	-	23S ribosomal RNA
59440	59555	+	116	150387853	Amet_R0017	-	5S ribosomal RNA
996643	996716	+	74	150387853	Amet_R0018	-	^{01 Gly tRNA}
996725	996801	+	77	150387853	Amet_R0019	-	^{11 Arg tRNA}
996844	996919	+	76	150387853	Amet_R0020	-	^{09 His tRNA}
996956	997031	+	76	150387853	Amet_R0021	-	^{09 His tRNA}
997036	997111	+	76	150387853	Amet_R0022	-	^{05 Gln tRNA}
997147	997223	+	77	150387853	Amet_R0023	-	^{11 Arg tRNA}
997239	997315	+	77	150387853	Amet_R0024	-	^{11 Arg tRNA}
1009021	1009100	+	80	150387853	Amet_R0025	-	Xaa tRNA
1715308	1715383	+	76	150387853	Amet_R0026	-	^{13 Val tRNA}
1715384	1715459	+	76	150387853	Amet_R0027	-	^{17 Phe tRNA}
1715478	1715552	+	75	150387853	Amet_R0028	-	^{19 Cys tRNA}
1837188	1838708	+	1521	150387853	Amet_R0029	-	16S ribosomal RNA
1838777	1838852	+	76	150387853	Amet_R0030	-	^{02 Ala tRNA}
1839146	1842080	+	2935	150387853	Amet_R0031	-	23S ribosomal RNA
1842262	1842377	+	116	150387853	Amet_R0032	-	5S ribosomal RNA
1842385	1842459	+	75	150387853	Amet_R0033	-	^{07 Asn tRNA}
1842465	1842553	+	89	150387853	Amet_R0034	-	^{15 Leu tRNA}
1842569	1842644	+	76	150387853	Amet_R0035	-	^{16 Met tRNA}
1842650	1842726	+	77	150387853	Amet_R0036	-	^{16 Met tRNA}
1842736	1842810	+	75	150387853	Amet_R0037	-	^{04 Glu tRNA}
1842819	1842894	+	76	150387853	Amet_R0038	-	^{13 Val tRNA}
1843020	1843096	+	77	150387853	Amet_R0039	-	^{06 Asp tRNA}
1843166	1843250	+	85	150387853	Amet_R0040	-	^{18 Tyr tRNA}
1843290	1843372	+	83	150387853	Amet_R0041	-	^{15 Leu tRNA}
1843694	1843768	+	75	150387853	Amet_R0042	-	^{01 Gly tRNA}
1843781	1843856	+	76	150387853	Amet_R0043	-	^{09 His tRNA}
1843869	1843943	+	75	150387853	Amet_R0044	-	^{19 Cys tRNA}
1843948	1844024	+	77	150387853	Amet_R0045	-	^{11 Arg tRNA}
2399957	2400049	+	93	150387853	Amet_R0046	-	Sec tRNA
2847478	2847546	-	69	150387853	Amet_R0047	-	Xaa tRNA
2867783	2867859	-	77	150387853	Amet_R0048	-	^{03 Pro tRNA}
3018739	3019075	-	337	150387853	Amet_R0049	-	RNA component of RNaseP
3165279	3165365	-	87	150387853	Amet_R0050	-	^{15 Leu tRNA}
3174464	3174550	+	87	150387853	Amet_R0051	-	^{15 Leu tRNA}
3221892	3221967	+	76	150387853	Amet_R0052	-	^{02 Ala tRNA}
3236999	3237075	-	77	150387853	Amet_R0053	-	^{13 Val tRNA}
3362100	3362174	-	75	150387853	Amet_R0054	-	^{12 Thr tRNA}
3659888	3660242	-	355	150387853	Amet_R0055	-	tmRNA
4429238	4429313	-	76	150387853	Amet_R0056	-	^{17 Phe tRNA}
4429323	4429399	-	77	150387853	Amet_R0057	-	^{14 Ile tRNA}
4429405	4429480	-	76	150387853	Amet_R0058	-	^{10 Lys tRNA}
4429485	4429559	-	75	150387853	Amet_R0059	-	^{01 Gly tRNA}
4429587	4429669	-	83	150387853	Amet_R0060	-	^{15 Leu tRNA}
4429807	4429891	-	85	150387853	Amet_R0061	-	^{18 Tyr tRNA}
4429904	4429979	-	76	150387853	Amet_R0062	-	^{12 Thr tRNA}
4429993	4430069	-	77	150387853	Amet_R0063	-	^{06 Asp tRNA}
4430196	4430271	-	76	150387853	Amet_R0064	-	^{13 Val tRNA}
4430284	4430358	-	75	150387853	Amet_R0065	-	^{04 Glu tRNA}
4430365	4430440	-	76	150387853	Amet_R0066	-	^{16 Met tRNA}
4430456	4430544	-	89	150387853	Amet_R0067	-	^{15 Leu tRNA}
4430550	4430624	-	75	150387853	Amet_R0068	-	^{07 Asn tRNA}
4430632	4430747	-	116	150387853	Amet_R0069	-	5S ribosomal RNA
4430876	4433810	-	2935	150387853	Amet_R0070	-	23S ribosomal RNA
4434170	4435690	-	1521	150387853	Amet_R0071	-	16S ribosomal RNA
4436016	4436089	-	74	150387853	Amet_R0072	-	^{01 Gly tRNA}
4436098	4436173	-	76	150387853	Amet_R0073	-	^{12 Thr tRNA}
4436187	4436263	-	77	150387853	Amet_R0074	-	^{06 Asp tRNA}
4436276	4436352	-	77	150387853	Amet_R0075	-	^{16 Met tRNA}
4436436	4436511	-	76	150387853	Amet_R0076	-	^{16 Met tRNA}
4436589	4436664	-	76	150387853	Amet_R0077	-	^{17 Phe tRNA}
4436674	4436750	-	77	150387853	Amet_R0078	-	^{14 Ile tRNA}
4436756	4436832	-	77	150387853	Amet_R0079	-	^{03 Pro tRNA}
4436839	4436914	-	76	150387853	Amet_R0080	-	^{20 Trp tRNA}
4436937	4437013	-	77	150387853	Amet_R0081	-	^{16 Met tRNA}
4437028	4437104	-	77	150387853	Amet_R0082	-	^{03 Pro tRNA}
4437114	4437205	-	92	150387853	Amet_R0083	-	^{08 Ser tRNA}
4437220	4437308	-	89	150387853	Amet_R0084	-	^{08 Ser tRNA}
4437317	4437392	-	76	150387853	Amet_R0085	-	^{10 Lys tRNA}
4437397	4437472	-	76	150387853	Amet_R0086	-	^{05 Gln tRNA}
4437479	4437555	-	77	150387853	Amet_R0087	-	^{11 Arg tRNA}
4437564	4437637	-	74	150387853	Amet_R0088	-	^{01 Gly tRNA}
4437646	4437721	-	76	150387853	Amet_R0089	-	^{12 Thr tRNA}
4437735	4437811	-	77	150387853	Amet_R0090	-	^{06 Asp tRNA}
4437937	4438012	-	76	150387853	Amet_R0091	-	^{13 Val tRNA}
4438025	4438099	-	75	150387853	Amet_R0092	-	^{04 Glu tRNA}
4438106	4438181	-	76	150387853	Amet_R0093	-	^{16 Met tRNA}
4438249	4438364	-	116	150387853	Amet_R0094	-	5S ribosomal RNA
4438493	4441427	-	2935	150387853	Amet_R0095	-	23S ribosomal RNA
4441686	4443206	-	1521	150387853	Amet_R0096	-	16S ribosomal RNA
4444760	4444833	-	74	150387853	Amet_R0097	-	^{01 Gly tRNA}
4444870	4444946	-	77	150387853	Amet_R0098	-	^{16 Met tRNA}
4445030	4445105	-	76	150387853	Amet_R0099	-	^{16 Met tRNA}
4445183	4445258	-	76	150387853	Amet_R0100	-	^{17 Phe tRNA}
4445268	4445344	-	77	150387853	Amet_R0101	-	^{14 Ile tRNA}
4445350	4445426	-	77	150387853	Amet_R0102	-	^{03 Pro tRNA}
4445433	4445508	-	76	150387853	Amet_R0103	-	^{20 Trp tRNA}
4445531	4445607	-	77	150387853	Amet_R0104	-	^{16 Met tRNA}
4445622	4445698	-	77	150387853	Amet_R0105	-	^{03 Pro tRNA}
4445708	4445799	-	92	150387853	Amet_R0106	-	^{08 Ser tRNA}
4445814	4445902	-	89	150387853	Amet_R0107	-	^{08 Ser tRNA}
4445911	4445986	-	76	150387853	Amet_R0108	-	^{10 Lys tRNA}
4445991	4446065	-	75	150387853	Amet_R0109	-	^{01 Gly tRNA}
4446093	4446175	-	83	150387853	Amet_R0110	-	^{15 Leu tRNA}
4446260	4446344	-	85	150387853	Amet_R0111	-	^{18 Tyr tRNA}
4446357	4446432	-	76	150387853	Amet_R0112	-	^{12 Thr tRNA}
4446446	4446522	-	77	150387853	Amet_R0113	-	^{06 Asp tRNA}
4446648	4446723	-	76	150387853	Amet_R0114	-	^{13 Val tRNA}
4446736	4446810	-	75	150387853	Amet_R0115	-	^{04 Glu tRNA}
4446817	4446892	-	76	150387853	Amet_R0116	-	^{16 Met tRNA}
4446907	4446995	-	89	150387853	Amet_R0117	-	^{15 Leu tRNA}
4447001	4447075	-	75	150387853	Amet_R0118	-	^{07 Asn tRNA}
4447083	4447198	-	116	150387853	Amet_R0119	-	5S ribosomal RNA
4447380	4450314	-	2935	150387853	Amet_R0120	-	23S ribosomal RNA
4450484	4450559	-	76	150387853	Amet_R0121	-	^{02 Ala tRNA}
4450628	4452148	-	1521	150387853	Amet_R0122	-	16S ribosomal RNA
4452537	4452612	-	76	150387853	Amet_R0123	-	^{17 Phe tRNA}
4452622	4452698	-	77	150387853	Amet_R0124	-	^{14 Ile tRNA}
4452703	4452778	-	76	150387853	Amet_R0125	-	^{10 Lys tRNA}
4452783	4452858	-	76	150387853	Amet_R0126	-	^{05 Gln tRNA}
4452865	4452941	-	77	150387853	Amet_R0127	-	^{11 Arg tRNA}
4452950	4453023	-	74	150387853	Amet_R0128	-	^{01 Gly tRNA}
4453032	4453107	-	76	150387853	Amet_R0129	-	^{12 Thr tRNA}
4453241	4453316	-	76	150387853	Amet_R0130	-	^{13 Val tRNA}
4453329	4453403	-	75	150387853	Amet_R0131	-	^{04 Glu tRNA}
4453407	4453522	-	116	150387853	Amet_R0132	-	5S ribosomal RNA
4453686	4456620	-	2935	150387853	Amet_R0133	-	23S ribosomal RNA
4457012	4458532	-	1521	150387853	Amet_R0134	-	16S ribosomal RNA
4628340	4628455	-	116	150387853	Amet_R0135	-	5S ribosomal RNA
4628636	4631570	-	2935	150387853	Amet_R0136	-	23S ribosomal RNA
4631934	4633454	-	1521	150387853	Amet_R0137	-	16S ribosomal RNA
4894590	4894664	-	75	150387853	Amet_R0138	-	^{04 Glu tRNA}
4894718	4894793	-	76	150387853	Amet_R0139	-	^{10 Lys tRNA}