Геном прокариот/Материалы:NC 009636

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009636            3781904 bp    DNA     circular BCT 03-JUL-2007
   DEFINITION  Sinorhizobium medicae WSM419, complete genome.
   ACCESSION   NC_009636
   VERSION     NC_009636.1  GI:150395228
   KEYWORDS    .
   SOURCE      Sinorhizobium medicae WSM419
     ORGANISM  Sinorhizobium medicae WSM419
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
   REFERENCE   1  (bases 1 to 3781904)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M.,
               Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Reeve,W. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Sinorhizobium medicae WSM419 chromosome
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3781904)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3781904)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M.,
               Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Reeve,W. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (21-JUN-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000738.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001622
               Source DNA and bacteria available from Wayne Reeve
               (reeve@murdoch.edu.au)
               Contacts: Wayne Reeve (reeve@murdoch.edu.au)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
95406	95482	+	77	150395228	Smed_R0001	-	^{11 Arg tRNA}
127547	127622	-	76	150395228	Smed_R0002	-	^{12 Thr tRNA}
149463	149537	+	75	150395228	Smed_R0003	-	^{01 Gly tRNA}
232539	232613	-	75	150395228	Smed_R0004	-	^{12 Thr tRNA}
238918	238993	+	76	150395228	Smed_R0005	-	^{17 Phe tRNA}
348637	348713	+	77	150395228	Smed_R0006	-	^{09 His tRNA}
397699	397772	-	74	150395228	Smed_R0007	-	^{05 Gln tRNA}
599679	599753	+	75	150395228	Smed_R0008	-	^{05 Gln tRNA}
603503	603579	+	77	150395228	Smed_R0009	-	^{03 Pro tRNA}
717253	717342	-	90	150395228	Smed_R0010	-	^{08 Ser tRNA}
894337	894413	+	77	150395228	Smed_R0011	-	^{03 Pro tRNA}
959330	959405	-	76	150395228	Smed_R0012	-	^{13 Val tRNA}
959865	959941	+	77	150395228	Smed_R0013	-	^{06 Asp tRNA}
960011	960087	+	77	150395228	Smed_R0014	-	^{06 Asp tRNA}
1041875	1041950	+	76	150395228	Smed_R0015	-	^{12 Thr tRNA}
1046202	1046286	+	85	150395228	Smed_R0016	-	^{18 Tyr tRNA}
1046310	1046383	+	74	150395228	Smed_R0017	-	^{01 Gly tRNA}
1049921	1049996	+	76	150395228	Smed_R0018	-	^{20 Trp tRNA}
1095586	1095670	+	85	150395228	Smed_R0019	-	^{15 Leu tRNA}
1258759	1258843	+	85	150395228	Smed_R0020	-	^{15 Leu tRNA}
1392146	1392235	+	90	150395228	Smed_R0021	-	^{08 Ser tRNA}
1435040	1435115	+	76	150395228	Smed_R0022	-	^{02 Ala tRNA}
1436539	1436612	+	74	150395228	Smed_R0023	-	^{19 Cys tRNA}
1438958	1439032	+	75	150395228	Smed_R0024	-	^{07 Asn tRNA}
1456127	1456212	-	86	150395228	Smed_R0025	-	^{15 Leu tRNA}
1506585	1506660	+	76	150395228	Smed_R0026	-	^{10 Lys tRNA}
1527624	1527700	-	77	150395228	Smed_R0027	-	^{11 Arg tRNA}
1528090	1528166	-	77	150395228	Smed_R0028	-	^{03 Pro tRNA}
1531855	1531930	+	76	150395228	Smed_R0029	-	^{04 Glu tRNA}
1532147	1532222	+	76	150395228	Smed_R0030	-	^{04 Glu tRNA}
1532279	1532353	+	75	150395228	Smed_R0031	-	^{04 Glu tRNA}
1532539	1532614	+	76	150395228	Smed_R0032	-	^{04 Glu tRNA}
1984916	1984991	-	76	150395228	Smed_R0033	-	^{10 Lys tRNA}
2151161	2151493	-	333	150395228	Smed_R0034	-	RNA component of RNaseP
2295232	2295307	-	76	150395228	Smed_R0035	-	^{16 Met tRNA}
2583865	2583941	-	77	150395228	Smed_R0036	-	^{16 Met tRNA}
2584024	2584137	-	114	150395228	Smed_R0037	-	5S ribosomal RNA
2584372	2587011	-	2640	150395228	Smed_R0038	-	23S ribosomal RNA
2587827	2587902	-	76	150395228	Smed_R0039	-	^{02 Ala tRNA}
2588067	2588143	-	77	150395228	Smed_R0040	-	^{14 Ile tRNA}
2588398	2589875	-	1478	150395228	Smed_R0041	-	16S ribosomal RNA
2622997	2623081	-	85	150395228	Smed_R0042	-	^{15 Leu tRNA}
2697466	2697542	-	77	150395228	Smed_R0043	-	^{16 Met tRNA}
2834043	2834117	+	75	150395228	Smed_R0044	-	^{13 Val tRNA}
2989057	2989133	-	77	150395228	Smed_R0045	-	^{16 Met tRNA}
2989216	2989329	-	114	150395228	Smed_R0046	-	5S ribosomal RNA
2989564	2992203	-	2640	150395228	Smed_R0047	-	23S ribosomal RNA
2993019	2993094	-	76	150395228	Smed_R0048	-	^{02 Ala tRNA}
2993259	2993335	-	77	150395228	Smed_R0049	-	^{14 Ile tRNA}
2993590	2995067	-	1478	150395228	Smed_R0050	-	16S ribosomal RNA
3009945	3010021	+	77	150395228	Smed_R0051	-	^{11 Arg tRNA}
3154830	3154919	-	90	150395228	Smed_R0052	-	^{08 Ser tRNA}
3193426	3193500	-	75	150395228	Smed_R0053	-	^{01 Gly tRNA}
3463168	3464645	+	1478	150395228	Smed_R0054	-	16S ribosomal RNA
3464900	3464976	+	77	150395228	Smed_R0055	-	^{14 Ile tRNA}
3465141	3465216	+	76	150395228	Smed_R0056	-	^{02 Ala tRNA}
3466032	3468671	+	2640	150395228	Smed_R0057	-	23S ribosomal RNA
3468906	3469019	+	114	150395228	Smed_R0058	-	5S ribosomal RNA
3469102	3469178	+	77	150395228	Smed_R0059	-	^{16 Met tRNA}
3625735	3625824	+	90	150395228	Smed_R0060	-	^{08 Ser tRNA}
3636444	3636547	+	104	150395228	Smed_R0061	-	SRP RNA; RNA component of signal recognition particle
3662657	3662732	-	76	150395228	Smed_R0062	-	^{02 Ala tRNA}
3670604	3670690	+	87	150395228	Smed_R0063	-	^{15 Leu tRNA}