Геном прокариот/Материалы:NC 002662
(перенаправлено с «Материалы:NC 002662»)
 |
Базовый уровень статей |
 |
LOCUS NC_002662 2365589 bp DNA circular BCT 07-JUN-2007
DEFINITION Lactococcus lactis subsp. lactis Il1403, complete genome.
ACCESSION NC_002662
VERSION NC_002662.1 GI:15671982
KEYWORDS .
SOURCE Lactococcus lactis subsp. lactis Il1403
ORGANISM Lactococcus lactis subsp. lactis Il1403
Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 2365589)
AUTHORS Bolotin,A., Wincker,P., Mauger,S., Jaillon,O., Malarme,K.,
Weissenbach,J., Ehrlich,S.D. and Sorokin,A.
TITLE The complete genome sequence of the lactic acid bacterium
Lactococcus lactis ssp. lactis IL1403
JOURNAL Genome Res. 11 (5), 731-753 (2001)
PUBMED 11337471
REFERENCE 2 (bases 1 to 2365589)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2001) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2365589)
AUTHORS Bolotin,A., Wincker,P., Mauger,S., Jaillon,O., Malarme,K.,
Weissenbach,J., Ehrlich,S.D. and Sorokin,A.
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2001) INRA, Genetique Microbienne, Domaine de
Vilvert, Jouy en Josas 78352, France
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AE005176.
regions of prohages are represented by misc_features. Complete
genome of 5 L.lactis prophages can be found as separate proviral
genome records: 34907..49847 NC_002669 - Bacteriophage bIL310
447143..484092 NC_002668 - Bacteriophage bIL309 502595..517773
NC_002671 - Bacteriophage bIL312 1036549..1072086 NC_002666 -
Bacteriophage bIL285 1415283..1457116 NC_002667 - Bacteriophage
bIL286.
COMPLETENESS: full length.
REFSEQ gene predictions performed by GeneMark 2.4/GeneMark.hmm 2.0
with comparison to original submitter provided annotation. tRNA
predictions performed by tRNAscan-SE v.1.23. rRNA predictions
performed by BLAST.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 28196 | 28267 | + | 72 | 15671982 | L200081 | - | 04 Glu tRNA |
| 28273 | 28362 | + | 90 | 15671982 | L200082 | - | 08 Ser tRNA |
| 28373 | 28446 | + | 74 | 15671982 | L200083 | - | 16 Met tRNA |
| 28451 | 28523 | + | 73 | 15671982 | L200084 | - | 17 Phe tRNA |
| 28535 | 28605 | + | 71 | 15671982 | L200085 | - | 01 Gly tRNA |
| 28620 | 28693 | + | 74 | 15671982 | L200086 | - | 14 Ile tRNA |
| 28818 | 28891 | + | 74 | 15671982 | L200087 | - | 07 Asn tRNA |
| 56361 | 56433 | + | 73 | 15671982 | L200088 | - | 10 Lys tRNA |
| 123360 | 123448 | - | 89 | 15671982 | L200141 | - | 15 Leu tRNA |
| 126511 | 126597 | - | 87 | 15671982 | L200140 | - | 08 Ser tRNA |
| 155240 | 155312 | - | 73 | 15671982 | L200139 | - | 12 Thr tRNA |
| 256042 | 256130 | - | 89 | 15671982 | L200138 | - | 15 Leu tRNA |
| 275512 | 275599 | - | 88 | 15671982 | L200137 | - | 08 Ser tRNA |
| 282716 | 282789 | + | 74 | 15671982 | L200089 | - | 11 Arg tRNA |
| 283094 | 283167 | + | 74 | 15671982 | L200090 | - | 03 Pro tRNA |
| 424317 | 424387 | + | 71 | 15671982 | L200091 | - | 19 Cys tRNA |
| 447083 | 447156 | + | 74 | 15671982 | L200092 | - | 11 Arg tRNA |
| 517530 | 517603 | + | 74 | 15671982 | L200093 | - | 16 Met tRNA |
| 537561 | 539108 | + | 1548 | 15671982 | L200142 | - | 16S ribosomal RNA |
| 539202 | 539274 | + | 73 | 15671982 | L200094 | - | 02 Ala tRNA |
| 539413 | 542313 | + | 2901 | 15671982 | L200143 | - | 23S ribosomal RNA |
| 542397 | 542512 | + | 116 | 15671982 | L200144 | - | 5S ribosomal RNA |
| 542516 | 542588 | + | 73 | 15671982 | L200095 | - | 13 Val tRNA |
| 542618 | 542690 | + | 73 | 15671982 | L200096 | - | 06 Asp tRNA |
| 542708 | 542780 | + | 73 | 15671982 | L200097 | - | 10 Lys tRNA |
| 542789 | 542870 | + | 82 | 15671982 | L200098 | - | 15 Leu tRNA |
| 542883 | 542955 | + | 73 | 15671982 | L200099 | - | 12 Thr tRNA |
| 542981 | 543052 | + | 72 | 15671982 | L200100 | - | 01 Gly tRNA |
| 543091 | 543164 | + | 74 | 15671982 | L200101 | - | 11 Arg tRNA |
| 543170 | 543243 | + | 74 | 15671982 | L200102 | - | 03 Pro tRNA |
| 543281 | 543354 | + | 74 | 15671982 | L200103 | - | 16 Met tRNA |
| 543367 | 543440 | + | 74 | 15671982 | L200104 | - | 16 Met tRNA |
| 543448 | 543520 | + | 73 | 15671982 | L200105 | - | 17 Phe tRNA |
| 543531 | 543601 | + | 71 | 15671982 | L200106 | - | 01 Gly tRNA |
| 543628 | 543701 | + | 74 | 15671982 | L200107 | - | 14 Ile tRNA |
| 543744 | 543831 | + | 88 | 15671982 | L200108 | - | 08 Ser tRNA |
| 617800 | 617871 | + | 72 | 15671982 | L200109 | - | 11 Arg tRNA |
| 618494 | 618569 | + | 76 | 15671982 | L200110 | - | 10 Lys tRNA |
| 1412349 | 1412438 | - | 90 | 15671982 | L200136 | - | 08 Ser tRNA |
| 1690708 | 1690779 | - | 72 | 15671982 | L200135 | - | 05 Gln tRNA |
| 1711201 | 1711273 | + | 73 | 15671982 | L200111 | - | 11 Arg tRNA |
| 1980491 | 1980576 | - | 86 | 15671982 | L200134 | - | 15 Leu tRNA |
| 1980612 | 1980683 | - | 72 | 15671982 | L200133 | - | 01 Gly tRNA |
| 1980709 | 1980781 | - | 73 | 15671982 | L200132 | - | 12 Thr tRNA |
| 1980794 | 1980875 | - | 82 | 15671982 | L200131 | - | 15 Leu tRNA |
| 1980884 | 1980956 | - | 73 | 15671982 | L200130 | - | 10 Lys tRNA |
| 1980974 | 1981046 | - | 73 | 15671982 | L200129 | - | 06 Asp tRNA |
| 1981076 | 1981148 | - | 73 | 15671982 | L200128 | - | 13 Val tRNA |
| 1981152 | 1981267 | - | 116 | 15671982 | L200145 | - | 5S ribosomal RNA |
| 1981351 | 1984250 | - | 2900 | 15671982 | L200146 | - | 23S ribosomal RNA |
| 1984389 | 1984461 | - | 73 | 15671982 | L200127 | - | 02 Ala tRNA |
| 1984555 | 1986102 | - | 1548 | 15671982 | L200147 | - | 16S ribosomal RNA |
| 2012538 | 2012621 | - | 84 | 15671982 | L200126 | - | 15 Leu tRNA |
| 2151430 | 2151502 | - | 73 | 15671982 | L200125 | - | 12 Thr tRNA |
| 2218214 | 2218329 | - | 116 | 15671982 | L200148 | - | 5S ribosomal RNA |
| 2218413 | 2221311 | - | 2899 | 15671982 | L200149 | - | 23S ribosomal RNA |
| 2221450 | 2221522 | - | 73 | 15671982 | L200124 | - | 02 Ala tRNA |
| 2221616 | 2223163 | - | 1548 | 15671982 | L200150 | - | 16S ribosomal RNA |
| 2260725 | 2260840 | - | 116 | 15671982 | L200151 | - | 5S ribosomal RNA |
| 2260924 | 2263823 | - | 2900 | 15671982 | L200152 | - | 23S ribosomal RNA |
| 2263962 | 2264034 | - | 73 | 15671982 | L200123 | - | 02 Ala tRNA |
| 2264128 | 2265675 | - | 1548 | 15671982 | L200153 | - | 16S ribosomal RNA |
| 2299369 | 2299451 | - | 83 | 15671982 | L200122 | - | 15 Leu tRNA |
| 2340428 | 2340511 | - | 84 | 15671982 | L200121 | - | 15 Leu tRNA |
| 2340524 | 2340595 | - | 72 | 15671982 | L200120 | - | 05 Gln tRNA |
| 2340603 | 2340675 | - | 73 | 15671982 | L200119 | - | 09 His tRNA |
| 2340686 | 2340756 | - | 71 | 15671982 | L200118 | - | 20 Trp tRNA |
| 2340763 | 2340843 | - | 81 | 15671982 | L200117 | - | 18 Tyr tRNA |
| 2340879 | 2340951 | - | 73 | 15671982 | L200116 | - | 13 Val tRNA |
| 2340955 | 2341070 | - | 116 | 15671982 | L200154 | - | 5S ribosomal RNA |
| 2341154 | 2344054 | - | 2901 | 15671982 | L200155 | - | 23S ribosomal RNA |
| 2344193 | 2344265 | - | 73 | 15671982 | L200115 | - | 02 Ala tRNA |
| 2344359 | 2345906 | - | 1548 | 15671982 | L200156 | - | 16S ribosomal RNA |
| 2359943 | 2360016 | - | 74 | 15671982 | L200114 | - | 07 Asn tRNA |
| 2360053 | 2360124 | - | 72 | 15671982 | L200113 | - | 04 Glu tRNA |
| 2360134 | 2360249 | - | 116 | 15671982 | L200157 | - | 5S ribosomal RNA |
| 2360333 | 2363233 | - | 2901 | 15671982 | L200158 | - | 23S ribosomal RNA |
| 2363372 | 2363444 | - | 73 | 15671982 | L200112 | - | 02 Ala tRNA |
| 2363538 | 2365085 | - | 1548 | 15671982 | L200159 | - | 16S ribosomal RNA |