Материалы:NC 004547

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_004547            5064019 bp    DNA     circular BCT 02-DEC-2005
   DEFINITION  Erwinia carotovora subsp. atroseptica SCRI1043, complete genome.
   ACCESSION   NC_004547
   VERSION     NC_004547.2  GI:50118965
   KEYWORDS    complete genome.
   SOURCE      Erwinia carotovora subsp. atroseptica SCRI1043
     ORGANISM  Erwinia carotovora subsp. atroseptica SCRI1043
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Pectobacterium.
   REFERENCE   1  (bases 1 to 5064019)
     AUTHORS   Bell,K.S., Sebaihia,M., Pritchard,L., Holden,M.T., Hyman,L.J.,
               Holeva,M.C., Thomson,N.R., Bentley,S.D., Churcher,L.J., Mungall,K.,
               Atkin,R., Bason,N., Brooks,K., Chillingworth,T., Clark,K.,
               Doggett,J., Fraser,A., Hance,Z., Hauser,H., Jagels,K., Moule,S.,
               Norbertczak,H., Ormond,D., Price,C., Quail,M.A., Sanders,M.,
               Walker,D., Whitehead,S., Salmond,G.P., Birch,P.R., Parkhill,J. and
               Toth,I.K.
     TITLE     Genome sequence of the enterobacterial phytopathogen Erwinia
               carotovora subsp. atroseptica and characterization of virulence
               factors
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (30), 11105-11110 (2004)
      PUBMED   15263089
   REFERENCE   2  (bases 1 to 5064019)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5064019)
     CONSRTM   NCBI Microbial Genomes Annotation Project
     TITLE     Direct Submission
     JOURNAL   Submitted (18-FEB-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from BX950851.
               On Jul 9, 2004 this sequence version replaced gi:28850470.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
16895	18438	+	1544	50118965	ECAr001	-	16S ribosomal RNA
18580	18655	+	76	50118965	ECAt001	-	^{04 Glu tRNA}
18884	21791	+	2908	50118965	ECAr002	-	23S ribosomal RNA
21919	22038	+	120	50118965	ECAr003	-	5S ribosomal RNA
28751	28868	+	118	50118965	ECAs001	-
55285	55361	+	77	50118965	ECAt002	-	^{03 Pro tRNA}
240628	242170	+	1543	50118965	ECAr004	-	16S ribosomal RNA
242245	242321	+	77	50118965	ECAt003	-	^{14 Ile tRNA}
242364	242439	+	76	50118965	ECAt004	-	^{02 Ala tRNA}
242656	245563	+	2908	50118965	ECAr005	-	23S ribosomal RNA
245691	245810	+	120	50118965	ECAr006	-	5S ribosomal RNA
249788	249863	+	76	50118965	ECAt005	-	^{12 Thr tRNA}
249879	249963	+	85	50118965	ECAt006	-	^{18 Tyr tRNA}
250093	250167	+	75	50118965	ECAt007	-	^{01 Gly tRNA}
250174	250249	+	76	50118965	ECAt008	-	^{12 Thr tRNA}
273556	273693	-	138	50118965	ECAs002	-
282456	283998	+	1543	50118965	ECAr007	-	16S ribosomal RNA
284073	284149	+	77	50118965	ECAt009	-	^{14 Ile tRNA}
284192	284267	+	76	50118965	ECAt010	-	^{02 Ala tRNA}
284484	287391	+	2908	50118965	ECAr008	-	23S ribosomal RNA
287519	287638	+	120	50118965	ECAr009	-	5S ribosomal RNA
373579	373881	+	303	50118965	ECAs003	-
465940	466024	+	85	50118965	ECAt011	-	^{15 Leu tRNA}
526656	526839	+	184	50118965	ECAs004	-
688584	688659	-	76	50118965	ECAt012	-	^{17 Phe tRNA}
726565	726764	-	200	50118965	ECAs005	-
750486	750561	-	76	50118965	ECAt013	-	^{16 Met tRNA}
773027	773113	+	87	50118965	ECAt014	-	^{15 Leu tRNA}
776983	777059	+	77	50118965	ECAt015	-	^{16 Met tRNA}
783488	783604	+	117	50118965	ECAs006	-	ribosomal S15 gene leader
783836	784004	-	169	50118965	ECAs007	-
806751	806837	+	87	50118965	ECAt016	-	^{15 Leu tRNA}
806915	807001	+	87	50118965	ECAt017	-	^{15 Leu tRNA}
807076	807162	+	87	50118965	ECAt018	-	^{15 Leu tRNA}
847939	848012	+	74	50118965	ECAt019	-	^{01 Gly tRNA}
926946	927308	-	363	50118965	ECAs008	-
1001971	1002171	+	201	50118965	ECAs009	-
1075223	1075298	-	76	50118965	ECAt020	-	^{17 Phe tRNA}
1121082	1121158	-	77	50118965	ECAt021	-	^{16 Met tRNA}
1121207	1121283	-	77	50118965	ECAt022	-	^{16 Met tRNA}
1121332	1121408	-	77	50118965	ECAt023	-	^{16 Met tRNA}
1137209	1137283	-	75	50118965	ECAs010	-
1144373	1144720	+	348	50118965	ECAs011	-
1154216	1154372	+	157	50118965	ECAs012	-
1320488	1320609	+	122	50118965	ECAs013	-
1496589	1496662	-	74	50118965	ECAt024	-	^{05 Gln tRNA}
1496669	1496745	-	77	50118965	ECAt025	-	^{16 Met tRNA}
1496800	1496874	-	75	50118965	ECAt026	-	^{05 Gln tRNA}
1496910	1496984	-	75	50118965	ECAt027	-	^{05 Gln tRNA}
1497041	1497125	-	85	50118965	ECAt028	-	^{15 Leu tRNA}
1497133	1497209	-	77	50118965	ECAt029	-	^{16 Met tRNA}
1556667	1556742	+	76	50118965	ECAt030	-	^{10 Lys tRNA}
1556938	1557013	+	76	50118965	ECAt031	-	^{10 Lys tRNA}
1586840	1586927	+	88	50118965	ECAt032	-	^{08 Ser tRNA}
1727911	1727986	-	76	50118965	ECAt033	-	^{07 Asn tRNA}
1927139	1927214	-	76	50118965	ECAt034	-	^{07 Asn tRNA}
1989132	1989221	-	90	50118965	ECAt035	-	^{08 Ser tRNA}
2012343	2012430	+	88	50118965	ECAt036	-	^{08 Ser tRNA}
2038031	2038368	-	338	50118965	ECAs014	-
2106158	2106269	-	112	50118965	ECAs015	-
2159593	2159669	-	77	50118965	ECAt037	-	^{13 Val tRNA}
2179660	2179736	-	77	50118965	ECAt038	-	^{13 Val tRNA}
2247607	2247703	+	97	50118965	ECAs016	-
2643735	2643819	+	85	50118965	ECAt039	-	^{18 Tyr tRNA}
2786690	2786788	-	99	50118965	ECAs017	-
2786697	2786830	+	134	50118965	ECAs018	-
2846049	2846138	+	90	50118965	ECAt040	-	^{08 Ser tRNA}
3091867	3091943	+	77	50118965	ECAt041	-	^{03 Pro tRNA}
3227600	3227686	-	87	50118965	ECAt042	-	^{15 Leu tRNA}
3227695	3227768	-	74	50118965	ECAt043	-	^{19 Cys tRNA}
3227820	3227895	-	76	50118965	ECAt044	-	^{01 Gly tRNA}
3232835	3232910	-	76	50118965	ECAt045	-	^{10 Lys tRNA}
3236126	3236201	+	76	50118965	ECAt046	-	^{07 Asn tRNA}
3446540	3446614	+	75	50118965	ECAt047	-	^{11 Arg tRNA}
3483053	3483129	+	77	50118965	ECAt048	-	^{11 Arg tRNA}
3578398	3578494	-	97	50118965	ECAs019	-
3695406	3695481	-	76	50118965	ECAt049	-	^{02 Ala tRNA}
3695529	3695604	-	76	50118965	ECAt050	-	^{02 Ala tRNA}
3698520	3698595	+	76	50118965	ECAt051	-	^{13 Val tRNA}
3698654	3698729	+	76	50118965	ECAt052	-	^{13 Val tRNA}
3698797	3698872	+	76	50118965	ECAt053	-	^{13 Val tRNA}
3698880	3698955	+	76	50118965	ECAt054	-	^{10 Lys tRNA}
3748710	3748786	-	77	50118965	ECAt055	-	^{06 Asp tRNA}
3754266	3754342	-	77	50118965	ECAt056	-	^{06 Asp tRNA}
3754393	3754512	-	120	50118965	ECAr010	-	5S ribosomal RNA
3754640	3757547	-	2908	50118965	ECAr011	-	23S ribosomal RNA
3757776	3757851	-	76	50118965	ECAt057	-	^{04 Glu tRNA}
3757993	3759535	-	1543	50118965	ECAr012	-	16S ribosomal RNA
3777866	3777938	+	73	50118965	ECAs020	-
3781091	3781167	-	77	50118965	ECAt058	-	^{11 Arg tRNA}
3781221	3781297	-	77	50118965	ECAt059	-	^{11 Arg tRNA}
3781369	3781445	-	77	50118965	ECAt060	-	^{11 Arg tRNA}
3781454	3781546	-	93	50118965	ECAt061	-	^{08 Ser tRNA}
3880169	3880244	-	76	50118965	ECAt062	-	^{12 Thr tRNA}
3945847	3945967	-	121	50118965	ECAr013	-	5S ribosomal RNA
3946001	3946076	-	76	50118965	ECAt063	-	^{12 Thr tRNA}
3946093	3946212	-	120	50118965	ECAr014	-	5S ribosomal RNA
3946340	3949247	-	2908	50118965	ECAr015	-	23S ribosomal RNA
3949476	3949551	-	76	50118965	ECAt064	-	^{04 Glu tRNA}
3949693	3951235	-	1543	50118965	ECAr016	-	16S ribosomal RNA
4090515	4090605	-	91	50118965	ECAs021	-
4296610	4296706	+	97	50118965	ECAs022	-
4416625	4416700	-	76	50118965	ECAt065	-	^{01 Gly tRNA}
4434381	4434456	-	76	50118965	ECAt066	-	^{01 Gly tRNA}
4434533	4434608	-	76	50118965	ECAt067	-	^{01 Gly tRNA}
4472319	4472438	-	120	50118965	ECAr017	-	5S ribosomal RNA
4472566	4475473	-	2908	50118965	ECAr018	-	23S ribosomal RNA
4475679	4475754	-	76	50118965	ECAt068	-	^{02 Ala tRNA}
4475797	4475873	-	77	50118965	ECAt069	-	^{14 Ile tRNA}
4475948	4477490	-	1543	50118965	ECAr019	-	16S ribosomal RNA
4490506	4490617	-	112	50118965	ECAs023	-
4651380	4651485	-	106	50118965	ECAs024	-
4692513	4692589	-	77	50118965	ECAt070	-	^{03 Pro tRNA}
4692633	4692719	-	87	50118965	ECAt071	-	^{15 Leu tRNA}
4692769	4692844	-	76	50118965	ECAt072	-	^{09 His tRNA}
4692961	4693037	-	77	50118965	ECAt073	-	^{11 Arg tRNA}
4741571	4741646	-	76	50118965	ECAt074	-	^{20 Trp tRNA}
4741701	4741777	-	77	50118965	ECAt075	-	^{06 Asp tRNA}
4741828	4741947	-	120	50118965	ECAr020	-	5S ribosomal RNA
4742075	4744982	-	2908	50118965	ECAr021	-	23S ribosomal RNA
4745211	4745286	-	76	50118965	ECAt076	-	^{04 Glu tRNA}
4745428	4746970	-	1543	50118965	ECAr022	-	16S ribosomal RNA