Материалы:NC 004578

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_004578            6397126 bp    DNA     circular BCT 21-JUN-2007
   DEFINITION  Pseudomonas syringae pv. tomato str. DC3000, complete genome.
   ACCESSION   NC_004578
   VERSION     NC_004578.1  GI:28867243
   KEYWORDS    .
   SOURCE      Pseudomonas syringae pv. tomato str. DC3000
     ORGANISM  Pseudomonas syringae pv. tomato str. DC3000
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Pseudomonadaceae; Pseudomonas.
   REFERENCE   1  (bases 1 to 6397126)
     AUTHORS   Buell,C.R., Joardar,V., Lindeberg,M., Selengut,J., Paulsen,I.T.,
               Gwinn,M.L., Dodson,R.J., Deboy,R.T., Durkin,A.S., Kolonay,J.F.,
               Madupu,R., Daugherty,S., Brinkac,L., Beanan,M.J., Haft,D.H.,
               Nelson,W.C., Davidsen,T., Zafar,N., Zhou,L., Liu,J., Yuan,Q.,
               Khouri,H., Fedorova,N., Tran,B., Russell,D., Berry,K.,
               Utterback,T., Van Aken,S.E., Feldblyum,T.V., D'Ascenzo,M.,
               Deng,W.L., Ramos,A.R., Alfano,J.R., Cartinhour,S., Chatterjee,A.K.,
               Delaney,T.P., Lazarowitz,S.G., Martin,G.B., Schneider,D.J.,
               Tang,X., Bender,C.L., White,O., Fraser,C.M. and Collmer,A.
     TITLE     The complete genome sequence of the Arabidopsis and tomato pathogen
               Pseudomonas syringae pv. tomato DC3000
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 100 (18), 10181-10186 (2003)
      PUBMED   12928499
   REFERENCE   2  (bases 1 to 6397126)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-MAR-2003) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 6397126)
     AUTHORS   Buell,R., Joardar,V., Khouri,H., Fedorova,N., Tran,B., Russell,D.,
               Berry,K., Utterback,T., Van Aken,S., Feldblyum,T., Gwinn,M.,
               Dodson,R., DeBoy,R., Durkin,A., Kolonay,J., Madupu,R.,
               Daugherty,S., Brinkac,L., Beanan,M., Haft,D., Selengut,J.,
               Nelson,W., Davidsen,T., White,O., Fraser,C. and Collmer,A.
     TITLE     Direct Submission
     JOURNAL   Submitted (03-MAR-2003) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE016853.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
323982	324058	-	77	28867243	PSPTO_t01	-	^{11 Arg tRNA}
586008	586084	-	77	28867243	PSPTO_t02	-	^{16 Met tRNA}
666727	668265	+	1539	28867243	PSPTO_r01	-	16S ribosomal RNA
668362	668438	+	77	28867243	PSPTO_t03	-	^{14 Ile tRNA}
668483	668558	+	76	28867243	PSPTO_t04	-	^{02 Ala tRNA}
668802	671704	+	2903	28867243	PSPTO_r02	-	23S ribosomal RNA
671852	671971	+	120	28867243	PSPTO_r03	-	5S ribosomal RNA
674391	674475	+	85	28867243	PSPTO_t05	-	^{18 Tyr tRNA}
674500	674573	+	74	28867243	PSPTO_t06	-	^{01 Gly tRNA}
674600	674675	+	76	28867243	PSPTO_t07	-	^{12 Thr tRNA}
674841	674916	+	76	28867243	PSPTO_t08	-	^{20 Trp tRNA}
827541	829079	+	1539	28867243	PSPTO_r04	-	16S ribosomal RNA
829176	829252	+	77	28867243	PSPTO_t09	-	^{14 Ile tRNA}
829297	829372	+	76	28867243	PSPTO_t10	-	^{02 Ala tRNA}
829616	832518	+	2903	28867243	PSPTO_r05	-	23S ribosomal RNA
832666	832785	+	120	28867243	PSPTO_r06	-	5S ribosomal RNA
898785	898860	+	76	28867243	PSPTO_t11	-	^{07 Asn tRNA}
898890	898966	+	77	28867243	PSPTO_t12	-	^{03 Pro tRNA}
898972	899047	+	76	28867243	PSPTO_t13	-	^{10 Lys tRNA}
899143	899219	+	77	28867243	PSPTO_t14	-	^{03 Pro tRNA}
1072078	1073616	+	1539	28867243	PSPTO_r07	-	16S ribosomal RNA
1073713	1073789	+	77	28867243	PSPTO_t15	-	^{14 Ile tRNA}
1073834	1073909	+	76	28867243	PSPTO_t16	-	^{02 Ala tRNA}
1074153	1077055	+	2903	28867243	PSPTO_r08	-	23S ribosomal RNA
1077203	1077322	+	120	28867243	PSPTO_r09	-	5S ribosomal RNA
1162588	1162664	-	77	28867243	PSPTO_t17	-	^{16 Met tRNA}
1219496	1219570	-	75	28867243	PSPTO_t18	-	^{05 Gln tRNA}
1551777	1551861	-	85	28867243	PSPTO_t19	-	^{15 Leu tRNA}
1956097	1956172	+	76	28867243	PSPTO_t20	-	^{04 Glu tRNA}
1956175	1956250	+	76	28867243	PSPTO_t21	-	^{01 Gly tRNA}
1956350	1956425	+	76	28867243	PSPTO_t22	-	^{04 Glu tRNA}
1956430	1956505	+	76	28867243	PSPTO_t23	-	^{01 Gly tRNA}
2014810	2014900	+	91	28867243	PSPTO_t24	-	^{08 Ser tRNA}
2015010	2015086	+	77	28867243	PSPTO_t25	-	^{11 Arg tRNA}
2015174	2015250	+	77	28867243	PSPTO_t26	-	^{11 Arg tRNA}
2019304	2019380	+	77	28867243	PSPTO_t27	-	^{11 Arg tRNA}
2266664	2266753	-	90	28867243	PSPTO_t28	-	^{08 Ser tRNA}
2384751	2384826	+	76	28867243	PSPTO_t29	-	^{02 Ala tRNA}
2384916	2384991	+	76	28867243	PSPTO_t30	-	^{04 Glu tRNA}
2385044	2385119	+	76	28867243	PSPTO_t31	-	^{02 Ala tRNA}
2385164	2385239	+	76	28867243	PSPTO_t32	-	^{04 Glu tRNA}
2634736	2634812	+	77	28867243	PSPTO_t33	-	^{03 Pro tRNA}
2988034	2988110	+	77	28867243	PSPTO_t34	-	^{13 Val tRNA}
2988276	2988352	+	77	28867243	PSPTO_t35	-	^{13 Val tRNA}
3346191	3346276	+	86	28867243	PSPTO_t36	-	^{15 Leu tRNA}
3351545	3351618	-	74	28867243	PSPTO_t37	-	^{19 Cys tRNA}
3397753	3397828	-	76	28867243	PSPTO_t38	-	^{01 Gly tRNA}
3657062	3657137	-	76	28867243	PSPTO_t39	-	^{07 Asn tRNA}
3771634	3771721	+	88	28867243	PSPTO_t40	-	^{08 Ser tRNA}
3869438	3869557	-	120	28867243	PSPTO_r10	-	5S ribosomal RNA
3869705	3872607	-	2903	28867243	PSPTO_r11	-	23S ribosomal RNA
3872851	3872926	-	76	28867243	PSPTO_t41	-	^{02 Ala tRNA}
3872971	3873047	-	77	28867243	PSPTO_t42	-	^{14 Ile tRNA}
3873144	3874682	-	1539	28867243	PSPTO_r12	-	16S ribosomal RNA
4216266	4216350	-	85	28867243	PSPTO_t43	-	^{15 Leu tRNA}
4216407	4216482	-	76	28867243	PSPTO_t44	-	^{09 His tRNA}
4216534	4216610	-	77	28867243	PSPTO_t45	-	^{11 Arg tRNA}
4316299	4316375	-	77	28867243	PSPTO_t46	-	^{06 Asp tRNA}
4316490	4316566	-	77	28867243	PSPTO_t47	-	^{06 Asp tRNA}
4316635	4316710	-	76	28867243	PSPTO_t48	-	^{13 Val tRNA}
4408094	4408170	-	77	28867243	PSPTO_t49	-	^{06 Asp tRNA}
4408191	4408266	-	76	28867243	PSPTO_t50	-	^{13 Val tRNA}
4458619	4458708	-	90	28867243	PSPTO_t51	-	^{08 Ser tRNA}
4476434	4476509	-	76	28867243	PSPTO_t52	-	^{10 Lys tRNA}
4498448	4498524	+	77	28867243	PSPTO_t53	-	^{16 Met tRNA}
4498716	4498792	+	77	28867243	PSPTO_t54	-	^{16 Met tRNA}
4787411	4787484	+	74	28867243	PSPTO_t55	-	^{01 Gly tRNA}
5061291	5061367	-	77	28867243	PSPTO_t56	-	^{16 Met tRNA}
5061463	5061548	-	86	28867243	PSPTO_t57	-	^{15 Leu tRNA}
5592964	5593050	+	87	28867243	PSPTO_t58	-	^{15 Leu tRNA}
5593211	5593297	+	87	28867243	PSPTO_t59	-	^{15 Leu tRNA}
6074544	6074619	+	76	28867243	PSPTO_t60	-	^{17 Phe tRNA}
6097142	6097217	+	76	28867243	PSPTO_t61	-	^{12 Thr tRNA}
6213679	6213806	-	128	28867243	PSPTO_r16	-	5S ribosomal RNA
6213909	6214028	-	120	28867243	PSPTO_r13	-	5S ribosomal RNA
6214176	6217078	-	2903	28867243	PSPTO_r14	-	23S ribosomal RNA
6217322	6217397	-	76	28867243	PSPTO_t62	-	^{02 Ala tRNA}
6217442	6217518	-	77	28867243	PSPTO_t63	-	^{14 Ile tRNA}
6217615	6219153	-	1539	28867243	PSPTO_r15	-	16S ribosomal RNA