Материалы:NC 005773

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_005773            5928787 bp    DNA     circular BCT 22-JUN-2007
   DEFINITION  Pseudomonas syringae pv. phaseolicola 1448A, complete genome.
   ACCESSION   NC_005773
   VERSION     NC_005773.3  GI:71733195
   KEYWORDS    .
   SOURCE      Pseudomonas syringae pv. phaseolicola 1448A
     ORGANISM  Pseudomonas syringae pv. phaseolicola 1448A
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Pseudomonadaceae; Pseudomonas.
   REFERENCE   1  (bases 1 to 5928787)
     AUTHORS   Joardar,V., Lindeberg,M., Jackson,R.W., Selengut,J., Dodson,R.,
               Brinkac,L.M., Daugherty,S.C., Deboy,R., Durkin,A.S., Giglio,M.G.,
               Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S., Crabtree,J.,
               Creasy,T., Davidsen,T., Haft,D.H., Zafar,N., Zhou,L., Halpin,R.,
               Holley,T., Khouri,H., Feldblyum,T., White,O., Fraser,C.M.,
               Chatterjee,A.K., Cartinhour,S., Schneider,D.J., Mansfield,J.,
               Collmer,A. and Buell,C.R.
     TITLE     Whole-genome sequence analysis of Pseudomonas syringae pv.
               phaseolicola 1448A reveals divergence among pathovars in genes
               involved in virulence and transposition
     JOURNAL   J. Bacteriol. 187 (18), 6488-6498 (2005)
      PUBMED   16159782
   REFERENCE   2  (bases 1 to 5928787)
     AUTHORS   Joardar,V., Lindeberg,M., Jackson,R., Selengut,J., Dodson,R.,
               Brinkac,L.M., Daugherty,S.C., DeBoy,R.T., Durkin,A.S., Giglio,M.G.,
               Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S.A., Crabtree,J.,
               Creasy,T., Davidsen,T.M., Haft,D.H., Zafar,N., Zhou,L., Halpin,R.,
               Holley,T., Khouri,H.M., Feldblyum,T.V., White,O., Fraser,C.M.,
               Chatterjee,A.K., Cartinhour,S., Schneider,D., Mansfield,J.,
               Collmer,A. and Buell,R.
     TITLE     Direct Submission
     JOURNAL   Submitted (31-MAR-2005) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   REFERENCE   3  (bases 1 to 5928787)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-MAR-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000058.
               On Aug 3, 2005 this sequence version replaced gi:51904981.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
109533	109609	+	77	71733195	PSPPH_0098	-	^{11 Arg tRNA}
673159	673245	-	87	71733195	PSPPH_0572	-	^{15 Leu tRNA}
673406	673492	-	87	71733195	PSPPH_0573	-	^{15 Leu tRNA}
804015	805532	+	1518	71733195	PSPPH_0689	-	16S ribosomal RNA
805663	805739	+	77	71733195	PSPPH_0690	-	^{14 Ile tRNA}
805770	805845	+	76	71733195	PSPPH_0691	-	^{02 Ala tRNA}
806085	808986	+	2902	71733195	PSPPH_0692	-	23S ribosomal RNA
809136	809255	+	120	71733195	PSPPH_0693	-	5S ribosomal RNA
870876	870951	+	76	71733195	PSPPH_0743	-	^{07 Asn tRNA}
870981	871057	+	77	71733195	PSPPH_0744	-	^{03 Pro tRNA}
871063	871138	+	76	71733195	PSPPH_0745	-	^{10 Lys tRNA}
871234	871310	+	77	71733195	PSPPH_0746	-	^{03 Pro tRNA}
1048750	1050267	+	1518	71733195	PSPPH_0878	-	16S ribosomal RNA
1050398	1050474	+	77	71733195	PSPPH_0879	-	^{14 Ile tRNA}
1050505	1050580	+	76	71733195	PSPPH_0880	-	^{02 Ala tRNA}
1050820	1053721	+	2902	71733195	PSPPH_0881	-	23S ribosomal RNA
1053871	1053990	+	120	71733195	PSPPH_0882	-	5S ribosomal RNA
1125905	1125981	-	77	71733195	PSPPH_0948	-	^{16 Met tRNA}
1186141	1186215	-	75	71733195	PSPPH_0992	-	^{05 Gln tRNA}
1510567	1510651	-	85	71733195	PSPPH_1298	-	^{15 Leu tRNA}
1794902	1794991	+	90	71733195	PSPPH_1541	-	^{08 Ser tRNA}
1827343	1827418	+	76	71733195	PSPPH_1572	-	^{13 Val tRNA}
1827440	1827516	+	77	71733195	PSPPH_1573	-	^{06 Asp tRNA}
1927620	1927695	+	76	71733195	PSPPH_1665	-	^{13 Val tRNA}
1927762	1927838	+	77	71733195	PSPPH_1666	-	^{06 Asp tRNA}
1927954	1928030	+	77	71733195	PSPPH_1667	-	^{06 Asp tRNA}
1952561	1952637	+	77	71733195	PSPPH_1688	-	^{11 Arg tRNA}
1952689	1952764	+	76	71733195	PSPPH_1689	-	^{09 His tRNA}
1952821	1952905	+	85	71733195	PSPPH_1690	-	^{15 Leu tRNA}
2143091	2143180	-	90	71733195	PSPPH_1846	-	^{08 Ser tRNA}
2292475	2292550	+	76	71733195	PSPPH_1943	-	^{02 Ala tRNA}
2292639	2292714	+	76	71733195	PSPPH_1944	-	^{04 Glu tRNA}
2292767	2292842	+	76	71733195	PSPPH_1945	-	^{02 Ala tRNA}
2292889	2292964	+	76	71733195	PSPPH_1946	-	^{04 Glu tRNA}
2498536	2498612	+	77	71733195	PSPPH_2143	-	^{03 Pro tRNA}
2706626	2706701	+	76	71733195	PSPPH_2331	-	^{01 Gly tRNA}
2764709	2764782	+	74	71733195	PSPPH_2382	-	^{19 Cys tRNA}
2778554	2778639	-	86	71733195	PSPPH_2401	-	^{15 Leu tRNA}
2978401	2978477	+	77	71733195	PSPPH_2586	-	^{13 Val tRNA}
3465909	3465984	-	76	71733195	PSPPH_2985	-	^{07 Asn tRNA}
3576639	3576726	+	88	71733195	PSPPH_3078	-	^{08 Ser tRNA}
3631440	3631559	-	120	71733195	PSPPH_3131	-	5S ribosomal RNA
3631709	3634610	-	2902	71733195	PSPPH_3132	-	23S ribosomal RNA
3634850	3634925	-	76	71733195	PSPPH_3133	-	^{02 Ala tRNA}
3634956	3635032	-	77	71733195	PSPPH_3134	-	^{14 Ile tRNA}
3635163	3636680	-	1518	71733195	PSPPH_3135	-	16S ribosomal RNA
4042008	4042084	-	77	71733195	PSPPH_3501	-	^{11 Arg tRNA}
4046117	4046193	-	77	71733195	PSPPH_3507	-	^{11 Arg tRNA}
4046281	4046357	-	77	71733195	PSPPH_3508	-	^{11 Arg tRNA}
4046467	4046557	-	91	71733195	PSPPH_3509	-	^{08 Ser tRNA}
4168443	4168518	-	76	71733195	PSPPH_3621	-	^{01 Gly tRNA}
4168523	4168598	-	76	71733195	PSPPH_3622	-	^{04 Glu tRNA}
4168699	4168774	-	76	71733195	PSPPH_3623	-	^{01 Gly tRNA}
4168777	4168852	-	76	71733195	PSPPH_3624	-	^{04 Glu tRNA}
4314438	4314514	-	77	71733195	PSPPH_3761	-	^{03 Pro tRNA}
4314610	4314685	-	76	71733195	PSPPH_3762	-	^{10 Lys tRNA}
4336498	4336574	+	77	71733195	PSPPH_3786	-	^{16 Met tRNA}
4336806	4336882	+	77	71733195	PSPPH_3787	-	^{16 Met tRNA}
4547935	4548008	+	74	71733195	PSPPH_3982	-	^{01 Gly tRNA}
4780755	4780831	-	77	71733195	PSPPH_4192	-	^{16 Met tRNA}
4780927	4781012	-	86	71733195	PSPPH_4193	-	^{15 Leu tRNA}
4804338	4804725	+	388	71733195	PSPPH_4216	-	sRNA
5244035	5244110	-	76	71733195	PSPPH_4606	-	^{20 Trp tRNA}
5244276	5244351	-	76	71733195	PSPPH_4607	-	^{12 Thr tRNA}
5244378	5244451	-	74	71733195	PSPPH_4608	-	^{01 Gly tRNA}
5244476	5244560	-	85	71733195	PSPPH_4609	-	^{18 Tyr tRNA}
5246981	5247100	-	120	71733195	PSPPH_4613	-	5S ribosomal RNA
5247250	5250151	-	2902	71733195	PSPPH_4614	-	23S ribosomal RNA
5250391	5250466	-	76	71733195	PSPPH_4615	-	^{02 Ala tRNA}
5250497	5250573	-	77	71733195	PSPPH_4616	-	^{14 Ile tRNA}
5250704	5252221	-	1518	71733195	PSPPH_4617	-	16S ribosomal RNA
5323252	5323328	-	77	71733195	PSPPH_4687	-	^{16 Met tRNA}
5323380	5323446	-	67	71733195	PSPPH_4688	-	^{16 Met tRNA}
5605576	5605651	+	76	71733195	PSPPH_4932	-	^{17 Phe tRNA}
5619186	5619261	+	76	71733195	PSPPH_4945	-	^{12 Thr tRNA}
5778881	5779008	+	128	71733195	PSPPH_r01	-	5S ribosomal RNA
5779110	5779229	-	120	71733195	PSPPH_5092	-	5S ribosomal RNA
5779379	5782280	-	2902	71733195	PSPPH_5093	-	23S ribosomal RNA
5782520	5782595	-	76	71733195	PSPPH_5094	-	^{02 Ala tRNA}
5782626	5782702	-	77	71733195	PSPPH_5095	-	^{14 Ile tRNA}
5782833	5784350	-	1518	71733195	PSPPH_5096	-	16S ribosomal RNA