Материалы:NC 007347
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LOCUS NC_007347 3806533 bp DNA circular BCT 19-DEC-2006
DEFINITION Ralstonia eutropha JMP134 chromosome 1, complete sequence.
ACCESSION NC_007347
VERSION NC_007347.1 GI:73539706
KEYWORDS .
SOURCE Ralstonia eutropha JMP134
ORGANISM Ralstonia eutropha JMP134
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Burkholderiaceae; Cupriavidus.
REFERENCE 1 (bases 1 to 3806533)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
Martinez,M., Schmutz,J., Larimer,F., Land,M., Lykidis,A. and
Richardson,P.
TITLE Complete sequence of Chromosome1 of Ralstonia eutropha JMP134
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3806533)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (18-AUG-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3806533)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
Martinez,M., Schmutz,J., Larimer,F., Land,M., Lykidis,A. and
Richardson,P.
TITLE Direct Submission
JOURNAL Submitted (05-AUG-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000090.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available from Bernardo Gonzalez
(bgonzale@genes.bio.puc.cl)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-PGF
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 268835 | 268909 | + | 75 | 73539706 | Reut_AR0001 | - | 19 Cys tRNA |
| 371963 | 372039 | - | 77 | 73539706 | Reut_AR0002 | - | 05 Gln tRNA |
| 512266 | 512548 | + | 283 | 73539706 | Reut_AR0003 | - | RNA component of RNaseP |
| 568479 | 568555 | - | 77 | 73539706 | Reut_AR0004 | - | 16 Met tRNA |
| 823437 | 823511 | - | 75 | 73539706 | Reut_AR0005 | - | 01 Gly tRNA |
| 869360 | 869435 | + | 76 | 73539706 | Reut_AR0006 | - | 10 Lys tRNA |
| 969791 | 969869 | + | 79 | 73539706 | Reut_AR0007 | - | 16 Met tRNA |
| 1049109 | 1049193 | + | 85 | 73539706 | Reut_AR0008 | - | 15 Leu tRNA |
| 1220136 | 1220229 | + | 94 | 73539706 | Reut_AR0009 | - | 08 Ser tRNA |
| 1360574 | 1360650 | + | 77 | 73539706 | Reut_AR0010 | - | 13 Val tRNA |
| 1369110 | 1369186 | + | 77 | 73539706 | Reut_AR0011 | - | 03 Pro tRNA |
| 1381062 | 1381137 | - | 76 | 73539706 | Reut_AR0012 | - | 10 Lys tRNA |
| 1383769 | 1383844 | - | 76 | 73539706 | Reut_AR0013 | - | 10 Lys tRNA |
| 1415840 | 1415915 | - | 76 | 73539706 | Reut_AR0014 | - | 16 Met tRNA |
| 1481480 | 1481566 | + | 87 | 73539706 | Reut_AR0015 | - | 15 Leu tRNA |
| 1492777 | 1492852 | + | 76 | 73539706 | Reut_AR0016 | - | 13 Val tRNA |
| 1492898 | 1492974 | + | 77 | 73539706 | Reut_AR0017 | - | 06 Asp tRNA |
| 1893967 | 1894079 | - | 113 | 73539706 | Reut_AR0018 | - | 5S ribosomal RNA |
| 1894262 | 1897081 | - | 2820 | 73539706 | Reut_AR0019 | - | 23S ribosomal RNA |
| 1897409 | 1898936 | - | 1528 | 73539706 | Reut_AR0020 | - | 16S ribosomal RNA |
| 2099784 | 2099860 | + | 77 | 73539706 | Reut_AR0021 | - | 13 Val tRNA |
| 2208968 | 2209043 | + | 76 | 73539706 | Reut_AR0022 | - | 09 His tRNA |
| 2279458 | 2279544 | + | 87 | 73539706 | Reut_AR0023 | - | 15 Leu tRNA |
| 2325066 | 2325170 | + | 105 | 73539706 | Reut_AR0024 | - | SRP RNA; RNA component of signal recognition particle |
| 2339420 | 2339496 | - | 77 | 73539706 | Reut_AR0025 | - | 06 Asp tRNA |
| 2339565 | 2339640 | - | 76 | 73539706 | Reut_AR0026 | - | 04 Glu tRNA |
| 2339750 | 2339825 | - | 76 | 73539706 | Reut_AR0027 | - | 02 Ala tRNA |
| 2340014 | 2340090 | - | 77 | 73539706 | Reut_AR0028 | - | 06 Asp tRNA |
| 2340159 | 2340234 | - | 76 | 73539706 | Reut_AR0029 | - | 04 Glu tRNA |
| 2340299 | 2340374 | - | 76 | 73539706 | Reut_AR0030 | - | 02 Ala tRNA |
| 2374392 | 2374468 | - | 77 | 73539706 | Reut_AR0031 | - | 11 Arg tRNA |
| 2376141 | 2376217 | + | 77 | 73539706 | Reut_AR0032 | - | 03 Pro tRNA |
| 2418588 | 2418662 | + | 75 | 73539706 | Reut_AR0033 | - | 13 Val tRNA |
| 2457259 | 2457349 | - | 91 | 73539706 | Reut_AR0034 | - | 08 Ser tRNA |
| 2472896 | 2472982 | + | 87 | 73539706 | Reut_AR0035 | - | 15 Leu tRNA |
| 2475187 | 2475260 | - | 74 | 73539706 | Reut_AR0036 | - | 19 Cys tRNA |
| 2475364 | 2475439 | - | 76 | 73539706 | Reut_AR0037 | - | 01 Gly tRNA |
| 2475510 | 2475585 | - | 76 | 73539706 | Reut_AR0038 | - | 01 Gly tRNA |
| 2521716 | 2521791 | + | 76 | 73539706 | Reut_AR0039 | - | 07 Asn tRNA |
| 2608895 | 2608969 | + | 75 | 73539706 | Reut_AR0040 | - | 11 Arg tRNA |
| 2683363 | 2683438 | + | 76 | 73539706 | Reut_AR0041 | - | 12 Thr tRNA |
| 2708674 | 2708749 | - | 76 | 73539706 | Reut_AR0042 | - | 16 Met tRNA |
| 2709846 | 2709922 | - | 77 | 73539706 | Reut_AR0043 | - | 11 Arg tRNA |
| 2720936 | 2721025 | + | 90 | 73539706 | Reut_AR0044 | - | 08 Ser tRNA |
| 2828530 | 2828889 | + | 360 | 73539706 | Reut_AR0045 | - | tmRNA |
| 2845426 | 2845515 | - | 90 | 73539706 | Reut_AR0046 | - | 08 Ser tRNA |
| 2966574 | 2966658 | + | 85 | 73539706 | Reut_AR0047 | - | 15 Leu tRNA |
| 3245012 | 3245088 | + | 77 | 73539706 | Reut_AR0048 | - | 03 Pro tRNA |
| 3307719 | 3307831 | - | 113 | 73539706 | Reut_AR0049 | - | 5S ribosomal RNA |
| 3308014 | 3310833 | - | 2820 | 73539706 | Reut_AR0050 | - | 23S ribosomal RNA |
| 3311132 | 3311207 | - | 76 | 73539706 | Reut_AR0051 | - | 02 Ala tRNA |
| 3311219 | 3311295 | - | 77 | 73539706 | Reut_AR0052 | - | 14 Ile tRNA |
| 3311359 | 3312886 | - | 1528 | 73539706 | Reut_AR0053 | - | 16S ribosomal RNA |
| 3401210 | 3401285 | - | 76 | 73539706 | Reut_AR0054 | - | 12 Thr tRNA |
| 3501653 | 3501728 | - | 76 | 73539706 | Reut_AR0055 | - | 20 Trp tRNA |
| 3503044 | 3503118 | - | 75 | 73539706 | Reut_AR0056 | - | 12 Thr tRNA |
| 3503159 | 3503232 | - | 74 | 73539706 | Reut_AR0057 | - | 01 Gly tRNA |
| 3503284 | 3503369 | - | 86 | 73539706 | Reut_AR0058 | - | 18 Tyr tRNA |
| 3503690 | 3503802 | - | 113 | 73539706 | Reut_AR0059 | - | 5S ribosomal RNA |
| 3503985 | 3506804 | - | 2820 | 73539706 | Reut_AR0060 | - | 23S ribosomal RNA |
| 3507102 | 3507177 | - | 76 | 73539706 | Reut_AR0061 | - | 02 Ala tRNA |
| 3507189 | 3507265 | - | 77 | 73539706 | Reut_AR0062 | - | 14 Ile tRNA |
| 3507329 | 3508856 | - | 1528 | 73539706 | Reut_AR0063 | - | 16S ribosomal RNA |
| 3562366 | 3562441 | - | 76 | 73539706 | Reut_AR0064 | - | 02 Ala tRNA |
| 3629526 | 3629601 | - | 76 | 73539706 | Reut_AR0065 | - | 11 Arg tRNA |
| 3731460 | 3731535 | - | 76 | 73539706 | Reut_AR0066 | - | 17 Phe tRNA |