Материалы:NC 007484

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007484            3481691 bp    DNA     circular BCT 16-AUG-2007
   DEFINITION  Nitrosococcus oceani ATCC 19707, complete genome.
   ACCESSION   NC_007484
   VERSION     NC_007484.1  GI:77163561
   KEYWORDS    .
   SOURCE      Nitrosococcus oceani ATCC 19707
     ORGANISM  Nitrosococcus oceani ATCC 19707
               Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales;
               Chromatiaceae; Nitrosococcus.
   REFERENCE   1  (bases 1 to 3481691)
     AUTHORS   Klotz,M.G., Arp,D.J., Chain,P.S., El-Sheikh,A.F., Hauser,L.J.,
               Hommes,N.G., Larimer,F.W., Malfatti,S.A., Norton,J.M.,
               Poret-Peterson,A.T., Vergez,L.M. and Ward,B.B.
     TITLE     Complete genome sequence of the marine, chemolithoautotrophic,
               ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707
     JOURNAL   Appl. Environ. Microbiol. 72 (9), 6299-6315 (2006)
      PUBMED   16957257
   REFERENCE   2  (bases 1 to 3481691)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3481691)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Ivanova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (21-SEP-2005) US DOE Joint Genome Institute, 2400
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000127.
               URL -- http://www.jgi.doe.gov
               Source DNA available from Dan Arp (arpd@bcc.orst.edu)
               Bacteria available from ATCC: ATCC 19707
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
45036	45111	+	76	77163561	Noc_R0001	-	^{16 Met tRNA}
159954	160029	+	76	77163561	Noc_R0002	-	^{10 Lys tRNA}
208097	208171	+	75	77163561	Noc_R0003	-	^{12 Thr tRNA}
216418	216494	+	77	77163561	Noc_R0004	-	^{11 Arg tRNA}
555188	555262	+	75	77163561	Noc_R0005	-	^{05 Gln tRNA}
558871	558947	+	77	77163561	Noc_R0006	-	^{16 Met tRNA}
595004	595095	-	92	77163561	Noc_R0007	-	^{08 Ser tRNA}
958482	958558	-	77	77163561	Noc_R0008	-	^{11 Arg tRNA}
964957	965031	-	75	77163561	Noc_R0009	-	^{04 Glu tRNA}
999383	1000873	+	1491	77163561	Noc_R0010	-	16S ribosomal RNA
1001173	1001249	+	77	77163561	Noc_R0011	-	^{14 Ile tRNA}
1001312	1001387	+	76	77163561	Noc_R0012	-	^{02 Ala tRNA}
1001588	1004500	+	2913	77163561	Noc_R0013	-	23S ribosomal RNA
1004558	1004672	+	115	77163561	Noc_R0014	-	5S ribosomal RNA
1025673	1025765	+	93	77163561	Noc_R0015	-	^{08 Ser tRNA}
1244577	1244652	-	76	77163561	Noc_R0016	-	^{07 Asn tRNA}
1248128	1248204	+	77	77163561	Noc_R0017	-	^{13 Val tRNA}
1255607	1255683	+	77	77163561	Noc_R0018	-	^{03 Pro tRNA}
1261574	1261647	+	74	77163561	Noc_R0019	-	^{01 Gly tRNA}
1307217	1307577	+	361	77163561	Noc_R0020	-	tmRNA
1837239	1837312	-	74	77163561	Noc_R0021	-	^{19 Cys tRNA}
1837367	1837442	-	76	77163561	Noc_R0022	-	^{01 Gly tRNA}
1840493	1840579	-	87	77163561	Noc_R0023	-	^{15 Leu tRNA}
1849376	1849465	+	90	77163561	Noc_R0024	-	^{08 Ser tRNA}
1871585	1871670	-	86	77163561	Noc_R0025	-	^{15 Leu tRNA}
1879904	1880018	-	115	77163561	Noc_R0026	-	5S ribosomal RNA
1880076	1882988	-	2913	77163561	Noc_R0027	-	23S ribosomal RNA
1883213	1884703	-	1491	77163561	Noc_R0028	-	16S ribosomal RNA
1931655	1931730	+	76	77163561	Noc_R0029	-	^{02 Ala tRNA}
1931781	1931857	+	77	77163561	Noc_R0030	-	^{04 Glu tRNA}
1997133	1997209	-	77	77163561	Noc_R0031	-	^{06 Asp tRNA}
1997233	1997308	-	76	77163561	Noc_R0032	-	^{13 Val tRNA}
2170474	2170549	-	76	77163561	Noc_R0033	-	^{12 Thr tRNA}
2305013	2305089	-	77	77163561	Noc_R0034	-	^{11 Arg tRNA}
2445514	2445590	-	77	77163561	Noc_R0035	-	^{16 Met tRNA}
2586512	2586583	-	72	77163561	Noc_R0036	-	^{08 Ser tRNA}
2593020	2593095	-	76	77163561	Noc_R0037	-	^{10 Lys tRNA}
2593177	2593252	-	76	77163561	Noc_R0038	-	^{09 His tRNA}
2595836	2595912	-	77	77163561	Noc_R0039	-	^{11 Arg tRNA}
2595971	2596047	-	77	77163561	Noc_R0040	-	^{03 Pro tRNA}
2681660	2681735	-	76	77163561	Noc_R0041	-	^{20 Trp tRNA}
2683129	2683204	-	76	77163561	Noc_R0042	-	^{12 Thr tRNA}
2683252	2683325	-	74	77163561	Noc_R0043	-	^{01 Gly tRNA}
2683394	2683478	-	85	77163561	Noc_R0044	-	^{18 Tyr tRNA}
2779995	2780069	+	75	77163561	Noc_R0045	-	^{13 Val tRNA}
2916824	2916908	-	85	77163561	Noc_R0046	-	^{15 Leu tRNA}
2947145	2947235	+	91	77163561	Noc_R0047	-	^{08 Ser tRNA}
2947867	2947984	+	118	77163561	Noc_R0048	-	SRP RNA; RNA component of signal recognition
3041560	3041635	+	76	77163561	Noc_R0049	-	^{02 Ala tRNA}
3213890	3213963	+	74	77163561	Noc_R0050	-	^{05 Gln tRNA}
3251301	3251597	-	297	77163561	Noc_R0051	-	RNA component of RNaseP
3277718	3277804	+	87	77163561	Noc_R0052	-	^{15 Leu tRNA}
3306888	3306963	+	76	77163561	Noc_R0053	-	^{17 Phe tRNA}
3429057	3429133	-	77	77163561	Noc_R0054	-	^{03 Pro tRNA}