Материалы:NC 008700

Вы находитесь в Инкубаторе

Это исходный материал (как правило загружен ботом)

Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008700            4306142 bp    DNA     circular BCT 21-DEC-2006
   DEFINITION  Shewanella amazonensis SB2B, complete genome.
   ACCESSION   NC_008700
   VERSION     NC_008700.1  GI:119773142
   KEYWORDS    .
   SOURCE      Shewanella amazonensis SB2B
     ORGANISM  Shewanella amazonensis SB2B
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4306142)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Fredrickson,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella amazonensis SB2B
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4306142)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (21-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4306142)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Fredrickson,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000507.
               URL -- http://www.jgi.doe.gov
               JGI Project ID:  3634604
               Source DNA and bacteria available from Jim Fredrickson
               (Jim.fredrickson@pnl.gov)
               Contacts: Jim Fredrickson (Jim.fredrickson@pnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
56157	57693	+	1537	119773142	Sama_R0001	-	16S ribosomal RNA
57960	60873	+	2914	119773142	Sama_R0002	-	23S ribosomal RNA
61045	61160	+	116	119773142	Sama_R0003	-	5S ribosomal RNA
224354	225890	+	1537	119773142	Sama_R0004	-	16S ribosomal RNA
225961	226037	+	77	119773142	Sama_R0005	-	^{14 Ile tRNA}
226157	226232	+	76	119773142	Sama_R0006	-	^{02 Ala tRNA}
226509	229422	+	2914	119773142	Sama_R0007	-	23S ribosomal RNA
229488	229563	+	76	119773142	Sama_R0008	-	^{13 Val tRNA}
229630	229745	+	116	119773142	Sama_R0009	-	5S ribosomal RNA
233136	233211	+	76	119773142	Sama_R0010	-	^{12 Thr tRNA}
233219	233303	+	85	119773142	Sama_R0011	-	^{18 Tyr tRNA}
233339	233412	+	74	119773142	Sama_R0012	-	^{01 Gly tRNA}
233426	233501	+	76	119773142	Sama_R0013	-	^{12 Thr tRNA}
275883	277419	+	1537	119773142	Sama_R0014	-	16S ribosomal RNA
277686	280599	+	2914	119773142	Sama_R0015	-	23S ribosomal RNA
280666	280741	+	76	119773142	Sama_R0016	-	^{13 Val tRNA}
280810	280925	+	116	119773142	Sama_R0017	-	5S ribosomal RNA
280949	281025	+	77	119773142	Sama_R0018	-	^{06 Asp tRNA}
282826	284362	+	1537	119773142	Sama_R0019	-	16S ribosomal RNA
284629	287542	+	2914	119773142	Sama_R0020	-	23S ribosomal RNA
287714	287829	+	116	119773142	Sama_R0021	-	5S ribosomal RNA
436076	437612	+	1537	119773142	Sama_R0022	-	16S ribosomal RNA
437683	437759	+	77	119773142	Sama_R0023	-	^{14 Ile tRNA}
437879	437954	+	76	119773142	Sama_R0024	-	^{02 Ala tRNA}
438231	441144	+	2914	119773142	Sama_R0025	-	23S ribosomal RNA
441211	441286	+	76	119773142	Sama_R0026	-	^{13 Val tRNA}
441353	441468	+	116	119773142	Sama_R0027	-	5S ribosomal RNA
441514	441589	+	76	119773142	Sama_R0028	-	^{12 Thr tRNA}
441632	441746	+	115	119773142	Sama_R0029	-	5S ribosomal RNA
680733	680819	+	87	119773142	Sama_R0031	-	^{15 Leu tRNA}
1006573	1006649	-	77	119773142	Sama_R0032	-	^{16 Met tRNA}
1149697	1149772	-	76	119773142	Sama_R0033	-	^{12 Thr tRNA}
1149781	1149856	-	76	119773142	Sama_R0034	-	^{17 Phe tRNA}
1158691	1158777	+	87	119773142	Sama_R0035	-	^{15 Leu tRNA}
1158857	1158933	+	77	119773142	Sama_R0036	-	^{16 Met tRNA}
1165215	1165328	+	114	119773142	Sama_R0037	-	ribosomal S15 leader
1271639	1271730	+	92	119773142	Sama_R0038	-	^{08 Ser tRNA}
1271754	1271830	+	77	119773142	Sama_R0039	-	^{11 Arg tRNA}
1271866	1271942	+	77	119773142	Sama_R0040	-	^{11 Arg tRNA}
1271975	1272051	+	77	119773142	Sama_R0041	-	^{11 Arg tRNA}
1272091	1272167	+	77	119773142	Sama_R0042	-	^{11 Arg tRNA}
1272197	1272273	+	77	119773142	Sama_R0043	-	^{11 Arg tRNA}
1272281	1272372	+	92	119773142	Sama_R0044	-	^{08 Ser tRNA}
1272419	1272495	+	77	119773142	Sama_R0045	-	^{11 Arg tRNA}
1504419	1504495	+	77	119773142	Sama_R0046	-	^{03 Pro tRNA}
1504560	1504636	+	77	119773142	Sama_R0047	-	^{11 Arg tRNA}
1504649	1504724	+	76	119773142	Sama_R0048	-	^{09 His tRNA}
1528004	1528118	+	115	119773142	Sama_R0049	-	SRP RNA; RNA component of signal recognition particle
1867547	1869083	+	1537	119773142	Sama_R0050	-	16S ribosomal RNA
1869154	1869230	+	77	119773142	Sama_R0051	-	^{14 Ile tRNA}
1869351	1869426	+	76	119773142	Sama_R0052	-	^{02 Ala tRNA}
1869703	1872616	+	2914	119773142	Sama_R0053	-	23S ribosomal RNA
1872787	1872902	+	116	119773142	Sama_R0054	-	5S ribosomal RNA
1894753	1894829	-	77	119773142	Sama_R0055	-	^{03 Pro tRNA}
1954117	1954193	-	77	119773142	Sama_R0056	-	^{16 Met tRNA}
1954236	1954312	-	77	119773142	Sama_R0057	-	^{16 Met tRNA}
1954355	1954431	-	77	119773142	Sama_R0058	-	^{16 Met tRNA}
1963948	1964038	+	91	119773142	Sama_R0059	-	^{08 Ser tRNA}
1964400	1964490	+	91	119773142	Sama_R0060	-	^{08 Ser tRNA}
1968083	1968158	+	76	119773142	Sama_R0061	-	^{01 Gly tRNA}
1968189	1968262	+	74	119773142	Sama_R0062	-	^{19 Cys tRNA}
1968301	1968387	+	87	119773142	Sama_R0063	-	^{15 Leu tRNA}
2096231	2096318	+	88	119773142	Sama_R0064	-	^{08 Ser tRNA}
2138789	2138865	-	77	119773142	Sama_R0065	-	^{03 Pro tRNA}
2156072	2156148	-	77	119773142	Sama_R0066	-	^{13 Val tRNA}
2156188	2156264	-	77	119773142	Sama_R0067	-	^{13 Val tRNA}
2197974	2198047	-	74	119773142	Sama_R0068	-	^{19 Cys tRNA}
2198068	2198143	-	76	119773142	Sama_R0069	-	^{01 Gly tRNA}
2220380	2220464	+	85	119773142	Sama_R0070	-	^{18 Tyr tRNA}
2220502	2220586	+	85	119773142	Sama_R0071	-	^{18 Tyr tRNA}
2220614	2220698	+	85	119773142	Sama_R0072	-	^{18 Tyr tRNA}
2227039	2227114	+	76	119773142	Sama_R0073	-	^{07 Asn tRNA}
2227163	2227238	+	76	119773142	Sama_R0074	-	^{07 Asn tRNA}
2227262	2227337	+	76	119773142	Sama_R0075	-	^{07 Asn tRNA}
2227361	2227436	+	76	119773142	Sama_R0076	-	^{07 Asn tRNA}
2227460	2227535	+	76	119773142	Sama_R0077	-	^{07 Asn tRNA}
2294530	2294606	-	77	119773142	Sama_R0078	-	^{06 Asp tRNA}
2527293	2527368	-	76	119773142	Sama_R0079	-	^{10 Lys tRNA}
2527410	2527485	-	76	119773142	Sama_R0080	-	^{10 Lys tRNA}
2527525	2527600	-	76	119773142	Sama_R0081	-	^{10 Lys tRNA}
2527635	2527710	-	76	119773142	Sama_R0082	-	^{10 Lys tRNA}
2527750	2527825	-	76	119773142	Sama_R0083	-	^{10 Lys tRNA}
2527853	2527928	-	76	119773142	Sama_R0084	-	^{10 Lys tRNA}
2527965	2528040	-	76	119773142	Sama_R0085	-	^{10 Lys tRNA}
2528064	2528139	-	76	119773142	Sama_R0086	-	^{10 Lys tRNA}
2666313	2666388	-	76	119773142	Sama_R0087	-	^{02 Ala tRNA}
2666426	2666501	-	76	119773142	Sama_R0088	-	^{04 Glu tRNA}
2666536	2666611	-	76	119773142	Sama_R0089	-	^{02 Ala tRNA}
2666649	2666724	-	76	119773142	Sama_R0090	-	^{04 Glu tRNA}
2666759	2666834	-	76	119773142	Sama_R0091	-	^{02 Ala tRNA}
2666949	2667024	-	76	119773142	Sama_R0092	-	^{04 Glu tRNA}
2667059	2667134	-	76	119773142	Sama_R0093	-	^{02 Ala tRNA}
2667172	2667247	-	76	119773142	Sama_R0094	-	^{04 Glu tRNA}
2667284	2667359	-	76	119773142	Sama_R0095	-	^{04 Glu tRNA}
2667523	2667598	-	76	119773142	Sama_R0096	-	^{04 Glu tRNA}
2667635	2667710	-	76	119773142	Sama_R0097	-	^{04 Glu tRNA}
2667727	2667802	-	76	119773142	Sama_R0098	-	^{02 Ala tRNA}
2790511	2790586	+	76	119773142	Sama_R0099	-	^{11 Arg tRNA}
2868249	2868601	+	353	119773142	Sama_R0100	-	tmRNA
3077424	3077498	-	75	119773142	Sama_R0101	-	^{05 Gln tRNA}
3077543	3077619	-	77	119773142	Sama_R0102	-	^{16 Met tRNA}
3077621	3077695	-	75	119773142	Sama_R0103	-	^{05 Gln tRNA}
3077718	3077792	-	75	119773142	Sama_R0104	-	^{05 Gln tRNA}
3077832	3077916	-	85	119773142	Sama_R0105	-	^{15 Leu tRNA}
3077946	3078022	-	77	119773142	Sama_R0106	-	^{16 Met tRNA}
3104987	3105063	-	77	119773142	Sama_R0107	-	^{20 Trp tRNA}
3107019	3107095	-	77	119773142	Sama_R0108	-	^{06 Asp tRNA}
3107119	3107234	-	116	119773142	Sama_R0109	-	5S ribosomal RNA
3107352	3107427	-	76	119773142	Sama_R0110	-	^{13 Val tRNA}
3107493	3110406	-	2914	119773142	Sama_R0111	-	23S ribosomal RNA
3110673	3112209	-	1537	119773142	Sama_R0112	-	16S ribosomal RNA
3120564	3120639	+	76	119773142	Sama_R0113	-	^{17 Phe tRNA}
3120692	3120778	+	87	119773142	Sama_R0114	-	^{15 Leu tRNA}
3120816	3120902	+	87	119773142	Sama_R0115	-	^{15 Leu tRNA}
3120933	3121019	+	87	119773142	Sama_R0116	-	^{15 Leu tRNA}
3607448	3607523	-	76	119773142	Sama_R0118	-	^{01 Gly tRNA}
3607557	3607632	-	76	119773142	Sama_R0119	-	^{01 Gly tRNA}
3607666	3607741	-	76	119773142	Sama_R0120	-	^{01 Gly tRNA}
3607775	3607850	-	76	119773142	Sama_R0121	-	^{01 Gly tRNA}
3607884	3607959	-	76	119773142	Sama_R0122	-	^{01 Gly tRNA}
3874396	3874472	-	77	119773142	Sama_R0123	-	^{03 Pro tRNA}
3874550	3874626	-	77	119773142	Sama_R0124	-	^{03 Pro tRNA}
3874650	3874725	-	76	119773142	Sama_R0125	-	^{09 His tRNA}
3874761	3874837	-	77	119773142	Sama_R0126	-	^{11 Arg tRNA}
3980859	3981162	-	304	119773142	Sama_R0127	-	RNA component of RNaseP
4109629	4109702	-	74	119773142	Sama_R0128	-	^{01 Gly tRNA}
4277026	4277102	-	77	119773142	Sama_R0129	-	^{06 Asp tRNA}
4277126	4277241	-	116	119773142	Sama_R0130	-	5S ribosomal RNA
4277413	4280326	-	2914	119773142	Sama_R0131	-	23S ribosomal RNA
4280593	4282129	-	1537	119773142	Sama_R0132	-	16S ribosomal RNA