Материалы:NC 008800

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008800            4615899 bp    DNA     circular BCT 20-JAN-2007
   DEFINITION  Yersinia enterocolitica subsp. enterocolitica 8081, complete
               genome.
   ACCESSION   NC_008800
   VERSION     NC_008800.1  GI:123440403
   KEYWORDS    complete genome.
   SOURCE      Yersinia enterocolitica subsp. enterocolitica 8081
     ORGANISM  Yersinia enterocolitica subsp. enterocolitica 8081
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Yersinia.
   REFERENCE   1
     AUTHORS   Thomson,N.R., Howard,S., Wren,B.W., Holden,M.T., Crossman,L.,
               Challis,G.L., Churcher,C., Mungall,K., Brooks,K., Chillingworth,T.,
               Feltwell,T., Abdellah,Z., Hauser,H., Jagels,K., Maddison,M.,
               Moule,S., Sanders,M., Whitehead,S., Quail,M.A., Dougan,G.,
               Parkhill,J. and Prentice,M.B.
     TITLE     The Complete Genome Sequence and Comparative Genome Analysis of the
               High Pathogenicity Yersinia enterocolitica Strain 8081
     JOURNAL   (er) PLoS Genet. 2 (12), E206 (2006)
      PUBMED   17173484
   REFERENCE   2
     AUTHORS   Delihas,N.
     TITLE     Annotation and evolutionary relationships of a small regulatory RNA
               gene micF and its target ompF in Yersinia species
     JOURNAL   (er) BMC Microbiol. 3, 13 (2003)
      PUBMED   12834539
   REFERENCE   3  (bases 1 to 4615899)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (19-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 4615899)
     AUTHORS   Thomson,N.R.
     TITLE     Direct Submission
     JOURNAL   Submitted (30-JUN-2006) Thomson N.R., Pathogen Sequencing Unit, The
               Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge,
               CB10 1SA, UNITED KINGDOM
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AM286415.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
17506	18994	+	1489	123440403	YEr001	-	16S ribosomal RNA
19220	19295	+	76	123440403	YEt001	-	^{04 Glu tRNA}
19674	22667	+	2994	123440403	YEr002	-	23S ribosomal RNA
22667	22908	+	242	123440403	YEr003	-	5S ribosomal RNA
30017	30134	+	118	123440403	YEs001	-
31382	31582	+	201	123440403	YEs002	-
157085	157301	+	217	123440403	YEs003	-
160552	162040	+	1489	123440403	YEr004	-	16S ribosomal RNA
162169	162245	+	77	123440403	YEt002	-	^{14 Ile tRNA}
162320	162395	+	76	123440403	YEt003	-	^{02 Ala tRNA}
162741	165734	+	2994	123440403	YEr005	-	23S ribosomal RNA
165734	165970	+	237	123440403	YEr006	-	5S ribosomal RNA
166090	166166	+	77	123440403	YEt004	-	^{06 Asp tRNA}
166220	166295	+	76	123440403	YEt005	-	^{20 Trp tRNA}
217919	217995	+	77	123440403	YEt006	-	^{11 Arg tRNA}
218079	218154	+	76	123440403	YEt007	-	^{09 His tRNA}
218170	218256	+	87	123440403	YEt008	-	^{15 Leu tRNA}
218332	218408	+	77	123440403	YEt009	-	^{03 Pro tRNA}
314127	315615	+	1489	123440403	YEr007	-	16S ribosomal RNA
315840	315915	+	76	123440403	YEt010	-	^{04 Glu tRNA}
316294	319287	+	2994	123440403	YEr008	-	23S ribosomal RNA
319287	319527	+	241	123440403	YEr009	-	5S ribosomal RNA
323856	323931	+	76	123440403	YEt011	-	^{12 Thr tRNA}
323950	324034	+	85	123440403	YEt012	-	^{18 Tyr tRNA}
324050	324207	+	158	123440403	YEs004	-
324352	324426	+	75	123440403	YEt013	-	^{01 Gly tRNA}
324433	324508	+	76	123440403	YEt014	-	^{12 Thr tRNA}
345526	345651	-	126	123440403	YEs005	-
354706	356194	+	1489	123440403	YEr010	-	16S ribosomal RNA
356419	356494	+	76	123440403	YEt015	-	^{04 Glu tRNA}
356873	359866	+	2994	123440403	YEr011	-	23S ribosomal RNA
359866	360103	+	238	123440403	YEr012	-	5S ribosomal RNA
411468	411543	-	76	123440403	YEt016	-	^{17 Phe tRNA}
437336	437411	+	76	123440403	YEt017	-	^{01 Gly tRNA}
437503	437578	+	76	123440403	YEt018	-	^{01 Gly tRNA}
437653	437728	+	76	123440403	YEt019	-	^{01 Gly tRNA}
500681	500767	+	87	123440403	YEt020	-	^{15 Leu tRNA}
500828	500904	+	77	123440403	YEt021	-	^{16 Met tRNA}
507310	507428	+	119	123440403	YEs006	-
507658	507838	-	181	123440403	YEs007	-
579198	579282	+	85	123440403	YEt022	-	^{15 Leu tRNA}
643860	643946	-	87	123440403	YEt023	-	^{15 Leu tRNA}
644011	644097	-	87	123440403	YEt024	-	^{15 Leu tRNA}
687073	687191	+	119	123440403	YEs008	-
739972	740050	-	79	123440403	YEs009	-
962917	963009	+	93	123440403	YEt025	-	^{08 Ser tRNA}
963018	963094	+	77	123440403	YEt026	-	^{11 Arg tRNA}
963153	963229	+	77	123440403	YEt027	-	^{11 Arg tRNA}
966432	966506	-	75	123440403	YEs010	-
1019206	1020694	+	1489	123440403	YEr013	-	16S ribosomal RNA
1020919	1020994	+	76	123440403	YEt028	-	^{04 Glu tRNA}
1021373	1024366	+	2994	123440403	YEr014	-	23S ribosomal RNA
1024366	1024602	+	237	123440403	YEr015	-	5S ribosomal RNA
1024722	1024798	+	77	123440403	YEt029	-	^{06 Asp tRNA}
1049625	1049701	+	77	123440403	YEt030	-	^{06 Asp tRNA}
1116169	1116549	-	381	123440403	YEs011	-
1219794	1219897	+	104	123440403	YEs012	-
1354016	1354091	-	76	123440403	YEt031	-	^{02 Ala tRNA}
1354171	1354246	-	76	123440403	YEt032	-	^{02 Ala tRNA}
1356094	1356169	+	76	123440403	YEt033	-	^{13 Val tRNA}
1356224	1356299	+	76	123440403	YEt034	-	^{13 Val tRNA}
1356339	1356414	+	76	123440403	YEt035	-	^{13 Val tRNA}
1356606	1356681	+	76	123440403	YEt036	-	^{10 Lys tRNA}
1356689	1356852	+	164	123440403	YEs013	-
1356860	1357023	+	164	123440403	YEs014	-
1405212	1405286	-	75	123440403	YEt037	-	^{11 Arg tRNA}
1482285	1482585	-	301	123440403	YEs015	-
1571499	1571589	-	91	123440403	YEs016	-
1571842	1573016	+	1175	123440403	YE1401	-
1573270	1573357	+	88	123440403	YEt038	-	^{08 Ser tRNA}
1573364	1573439	+	76	123440403	YEt039	-	^{12 Thr tRNA}
1591923	1591999	-	77	123440403	YEt040	-	^{03 Pro tRNA}
1660972	1661052	-	81	123440403	YEs017	-
1757957	1759190	-	1234	123440403	YE1563	-
1796717	1796804	+	88	123440403	YEt041	-	^{08 Ser tRNA}
1834478	1834817	-	340	123440403	YEs018	-
1966735	1966897	-	163	123440403	YEs019	-
1991547	1991664	-	118	123440403	YEs020	-
1991571	1991671	+	101	123440403	YEs021	-
2001664	2001781	+	118	123440403	YEs022	-
2002787	2002862	+	76	123440403	YEt042	-	^{12 Thr tRNA}
2002864	2002938	+	75	123440403	YEt043	-	^{01 Gly tRNA}
2013450	2013535	-	86	123440403	YEt044	-	^{15 Leu tRNA}
2013546	2013619	-	74	123440403	YEt045	-	^{19 Cys tRNA}
2013670	2013745	-	76	123440403	YEt046	-	^{01 Gly tRNA}
2133260	2133335	+	76	123440403	YEt047	-	^{10 Lys tRNA}
2325478	2325580	-	103	123440403	YEs023	-
2365851	2365927	+	77	123440403	YEt048	-	^{13 Val tRNA}
2365976	2366052	+	77	123440403	YEt049	-	^{13 Val tRNA}
2366095	2366171	+	77	123440403	YEt050	-	^{13 Val tRNA}
2382205	2382313	+	109	123440403	YEs024	-
2460533	2460617	+	85	123440403	YEt051	-	^{18 Tyr tRNA}
2460631	2460791	+	161	123440403	YEs025	-
2460805	2460965	+	161	123440403	YEs026	-
2460979	2461139	+	161	123440403	YEs027	-
2461153	2461313	+	161	123440403	YEs028	-
2613470	2613559	+	90	123440403	YEt052	-	^{08 Ser tRNA}
2614794	2614883	+	90	123440403	YEt053	-	^{08 Ser tRNA}
2810915	2810990	+	76	123440403	YEt054	-	^{07 Asn tRNA}
2881784	2881859	+	76	123440403	YEt055	-	^{07 Asn tRNA}
2893538	2893613	+	76	123440403	YEt056	-	^{07 Asn tRNA}
3185286	3185361	-	76	123440403	YEt057	-	^{10 Lys tRNA}
3185420	3185495	-	76	123440403	YEt058	-	^{10 Lys tRNA}
3185592	3185662	-	71	123440403	YEt059	-	Xaa tRNA
3185720	3185795	-	76	123440403	YEt060	-	^{10 Lys tRNA}
3185886	3185958	-	73	123440403	YEt061	-	^{10 Lys tRNA}
3252927	3253003	+	77	123440403	YEt062	-	^{16 Met tRNA}
3253019	3253103	+	85	123440403	YEt063	-	^{15 Leu tRNA}
3253127	3253201	+	75	123440403	YEt064	-	^{05 Gln tRNA}
3253325	3253399	+	75	123440403	YEt065	-	^{05 Gln tRNA}
3253431	3253507	+	77	123440403	YEt066	-	^{16 Met tRNA}
3253513	3253587	+	75	123440403	YEt067	-	^{05 Gln tRNA}
3311810	3311886	-	77	123440403	YEt068	-	^{11 Arg tRNA}
3329500	3329583	-	84	123440403	YEs029	-
3388006	3388105	-	100	123440403	YEs030	-
3546822	3547063	-	242	123440403	YEr016	-	5S ribosomal RNA
3547063	3550056	-	2994	123440403	YEr017	-	23S ribosomal RNA
3550402	3550477	-	76	123440403	YEt069	-	^{02 Ala tRNA}
3550552	3550628	-	77	123440403	YEt070	-	^{14 Ile tRNA}
3550757	3552245	-	1489	123440403	YEr018	-	16S ribosomal RNA
3586741	3586915	-	175	123440403	YEs031	-
3595392	3595708	-	317	123440403	YEs032	-
3602754	3602859	+	106	123440403	YEs033	-
3607498	3607574	+	77	123440403	YEt071	-	^{16 Met tRNA}
3607677	3607753	+	77	123440403	YEt072	-	^{16 Met tRNA}
3607805	3607881	+	77	123440403	YEt073	-	^{16 Met tRNA}
3638306	3638400	-	95	123440403	YEs034	-
3685747	3685820	-	74	123440403	YEt074	-	^{01 Gly tRNA}
3711867	3712049	+	183	123440403	YEs035	-
3761922	3761997	+	76	123440403	YEt075	-	^{17 Phe tRNA}
3828040	3828092	-	53	123440403	YEt076	-	^{17 Phe tRNA}
4002700	4002884	-	185	123440403	YEs036	-
4021243	4021319	+	77	123440403	YEt077	-	^{16 Met tRNA}
4045482	4045665	+	184	123440403	YEs037	-
4067369	4067671	-	303	123440403	YEs038	-
4239160	4239290	-	131	123440403	YEr019	-	5S ribosomal RNA
4239324	4239399	-	76	123440403	YEt078	-	^{12 Thr tRNA}
4239407	4239648	-	242	123440403	YEr020	-	5S ribosomal RNA
4239648	4242641	-	2994	123440403	YEr021	-	23S ribosomal RNA
4242987	4243062	-	76	123440403	YEt079	-	^{02 Ala tRNA}
4243137	4243213	-	77	123440403	YEt080	-	^{14 Ile tRNA}
4243342	4244830	-	1489	123440403	YEr022	-	16S ribosomal RNA
4258864	4258975	-	112	123440403	YEs039	-
4382149	4382251	-	103	123440403	YEs040	-
4469630	4469706	-	77	123440403	YEt081	-	^{03 Pro tRNA}
4504182	4504272	-	91	123440403	YEt082	-	Sec tRNA