Материалы:NC 009381

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009381            4517345 bp    DNA     circular BCT 08-AUG-2007
   DEFINITION  Yersinia pestis Pestoides F, complete genome.
   ACCESSION   NC_009381
   VERSION     NC_009381.1  GI:145597324
   KEYWORDS    .
   SOURCE      Yersinia pestis Pestoides F
     ORGANISM  Yersinia pestis Pestoides F
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Yersinia.
   REFERENCE   1  (bases 1 to 4517345)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Di
               Bartolo,G., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Worsham,P., Chu,M., Bearden,S.,
               Garcia,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Yersinia pestis Pestoides F
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4517345)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-APR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4517345)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S.,
               Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Worsham,P., Chu,M., Bearden,S., Garcia,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (05-FEB-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000668.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2773191
               Source DNA and bacteria available from Emilio Garcia
               (garcia12@llnl.gov)
               Contacts: Emilio Garcia (garcia12@llnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
172801	174355	+	1555	145597324	YPDSF_R0001	-	16S ribosomal RNA
174446	174522	+	77	145597324	YPDSF_R0002	-	^{14 Ile tRNA}
174574	174649	+	76	145597324	YPDSF_R0003	-	^{02 Ala tRNA}
174868	177776	+	2909	145597324	YPDSF_R0004	-	23S ribosomal RNA
177881	178006	+	126	145597324	YPDSF_R0005	-	5S ribosomal RNA
178015	178090	+	76	145597324	YPDSF_R0006	-	^{12 Thr tRNA}
178123	178254	+	132	145597324	YPDSF_R0005b	-	5S ribosomal RNA
393066	393440	+	375	145597324	YPDSF_R0007	-	RNA component of RNaseP
480907	480983	-	77	145597324	YPDSF_R0008	-	^{16 Met tRNA}
618483	618558	-	76	145597324	YPDSF_R0010	-	^{17 Phe tRNA}
679058	679239	-	182	145597324	YPDSF_R0011	-	6S RNA
709698	709771	+	74	145597324	YPDSF_R0012	-	^{01 Gly tRNA}
854553	854629	-	77	145597324	YPDSF_R0013	-	^{13 Val tRNA}
854689	854765	-	77	145597324	YPDSF_R0014	-	^{13 Val tRNA}
1094068	1094152	+	85	145597324	YPDSF_R0015	-	^{18 Tyr tRNA}
1226610	1226699	+	90	145597324	YPDSF_R0016	-	^{08 Ser tRNA}
1235020	1235109	+	90	145597324	YPDSF_R0017	-	^{08 Ser tRNA}
1364837	1364912	+	76	145597324	YPDSF_R0018	-	^{07 Asn tRNA}
1420857	1420942	-	86	145597324	YPDSF_R0019	-	^{15 Leu tRNA}
1420953	1421026	-	74	145597324	YPDSF_R0020	-	^{19 Cys tRNA}
1421079	1421154	-	76	145597324	YPDSF_R0021	-	^{01 Gly tRNA}
1427603	1427678	-	76	145597324	YPDSF_R0022	-	^{10 Lys tRNA}
1502736	1502985	+	250	145597324	YPDSF_R0023	-	SraC_RyeA RNA
1502780	1502875	-	96	145597324	YPDSF_R0024	-	RyeB RNA
1557478	1557553	+	76	145597324	YPDSF_R0025	-	^{07 Asn tRNA}
1568500	1568575	+	76	145597324	YPDSF_R0026	-	^{07 Asn tRNA}
1725215	1725302	-	88	145597324	YPDSF_R0027	-	^{08 Ser tRNA}
1826356	1826432	-	77	145597324	YPDSF_R0028	-	^{06 Asp tRNA}
1833752	1833828	-	77	145597324	YPDSF_R0029	-	^{06 Asp tRNA}
1833949	1834072	-	124	145597324	YPDSF_R0030	-	5S ribosomal RNA
1834177	1837085	-	2909	145597324	YPDSF_R0031	-	23S ribosomal RNA
1837338	1837413	-	76	145597324	YPDSF_R0032	-	^{04 Glu tRNA}
1837547	1839092	-	1546	145597324	YPDSF_R0033	-	16S ribosomal RNA
1879200	1879481	-	282	145597324	YPDSF_R0034	-	regulatory RNA csrB
1891469	1891545	+	77	145597324	YPDSF_R0035	-	^{16 Met tRNA}
1891669	1891745	+	77	145597324	YPDSF_R0036	-	^{16 Met tRNA}
1891869	1891945	+	77	145597324	YPDSF_R0037	-	^{16 Met tRNA}
2287099	2287173	-	75	145597324	YPDSF_R0039	-	^{11 Arg tRNA}
2358409	2358484	-	76	145597324	YPDSF_R0040	-	^{10 Lys tRNA}
2358684	2358759	-	76	145597324	YPDSF_R0041	-	^{13 Val tRNA}
2358804	2358879	-	76	145597324	YPDSF_R0042	-	^{13 Val tRNA}
2358916	2358991	-	76	145597324	YPDSF_R0043	-	^{13 Val tRNA}
2360913	2360988	+	76	145597324	YPDSF_R0044	-	^{02 Ala tRNA}
2562259	2562423	+	165	145597324	YPDSF_R0045	-	tke1 RNA
2776103	2776179	+	77	145597324	YPDSF_R0046	-	^{03 Pro tRNA}
2808298	2808373	-	76	145597324	YPDSF_R0047	-	^{12 Thr tRNA}
2808379	2808466	-	88	145597324	YPDSF_R0048	-	^{08 Ser tRNA}
2810228	2810362	+	135	145597324	YPDSF_R0049	-	antisense RNA affecting ompF expression
2918258	2918327	-	70	145597324	YPDSF_R0050	-	^{10 Lys tRNA}
2918425	2918494	-	70	145597324	YPDSF_R0051	-	Xaa tRNA
2918523	2918598	-	76	145597324	YPDSF_R0052	-	^{10 Lys tRNA}
2918626	2918701	-	76	145597324	YPDSF_R0053	-	^{10 Lys tRNA}
2946509	2946872	+	364	145597324	YPDSF_R0054	-	tmRNA
2981842	2981918	+	77	145597324	YPDSF_R0055	-	^{16 Met tRNA}
2981926	2982010	+	85	145597324	YPDSF_R0056	-	^{15 Leu tRNA}
2982040	2982114	+	75	145597324	YPDSF_R0057	-	^{05 Gln tRNA}
2982198	2982272	+	75	145597324	YPDSF_R0058	-	^{05 Gln tRNA}
2982305	2982381	+	77	145597324	YPDSF_R0059	-	^{16 Met tRNA}
2982387	2982461	+	75	145597324	YPDSF_R0060	-	^{05 Gln tRNA}
3074560	3074636	-	77	145597324	YPDSF_R0061	-	^{11 Arg tRNA}
3144671	3144790	-	120	145597324	YPDSF_R0062	-	SRP RNA
3300770	3300904	-	135	145597324	YPDSF_R0063	-	5S ribosomal RNA
3301001	3303909	-	2909	145597324	YPDSF_R0064	-	23S ribosomal RNA
3304162	3304237	-	76	145597324	YPDSF_R0065	-	^{04 Glu tRNA}
3304371	3305916	-	1546	145597324	YPDSF_R0066	-	16S ribosomal RNA
3471164	3471256	+	93	145597324	YPDSF_R0067	-	^{08 Ser tRNA}
3471265	3471341	+	77	145597324	YPDSF_R0068	-	^{11 Arg tRNA}
3471399	3471475	+	77	145597324	YPDSF_R0069	-	^{11 Arg tRNA}
3651513	3651599	+	87	145597324	YPDSF_R0070	-	^{15 Leu tRNA}
3702564	3702648	-	85	145597324	YPDSF_R0071	-	^{15 Leu tRNA}
3759736	3759909	+	174	145597324	YPDSF_R0072	-	SraG RNA
3865087	3865163	-	77	145597324	YPDSF_R0073	-	^{03 Pro tRNA}
3876787	3876921	-	135	145597324	YPDSF_R0074	-	5S ribosomal RNA
3877018	3879926	-	2909	145597324	YPDSF_R0075	-	23S ribosomal RNA
3880145	3880220	-	76	145597324	YPDSF_R0076	-	^{02 Ala tRNA}
3880272	3880348	-	77	145597324	YPDSF_R0077	-	^{14 Ile tRNA}
3880448	3881993	-	1546	145597324	YPDSF_R0078	-	16S ribosomal RNA
3981278	3981354	-	77	145597324	YPDSF_R0079	-	^{03 Pro tRNA}
3981430	3981516	-	87	145597324	YPDSF_R0080	-	^{15 Leu tRNA}
3981533	3981608	-	76	145597324	YPDSF_R0081	-	^{09 His tRNA}
3981692	3981768	-	77	145597324	YPDSF_R0082	-	^{11 Arg tRNA}
4039087	4039162	-	76	145597324	YPDSF_R0083	-	^{20 Trp tRNA}
4039171	4039247	-	77	145597324	YPDSF_R0084	-	^{06 Asp tRNA}
4039366	4039493	-	128	145597324	YPDSF_R0085	-	5S ribosomal RNA
4039596	4042504	-	2909	145597324	YPDSF_R0086	-	23S ribosomal RNA
4042757	4042832	-	76	145597324	YPDSF_R0087	-	^{04 Glu tRNA}
4042966	4044511	-	1546	145597324	YPDSF_R0088	-	16S ribosomal RNA
4080462	4080538	-	77	145597324	YPDSF_R0090	-	^{16 Met tRNA}
4080599	4080685	-	87	145597324	YPDSF_R0091	-	^{15 Leu tRNA}
4145290	4145365	-	76	145597324	YPDSF_R0092	-	^{01 Gly tRNA}
4175258	4175333	+	76	145597324	YPDSF_R0093	-	^{17 Phe tRNA}
4279835	4279969	-	135	145597324	YPDSF_R0094	-	5S ribosomal RNA
4280066	4282974	-	2909	145597324	YPDSF_R0095	-	23S ribosomal RNA
4283227	4283302	-	76	145597324	YPDSF_R0096	-	^{04 Glu tRNA}
4283436	4284981	-	1546	145597324	YPDSF_R0097	-	16S ribosomal RNA
4314900	4314975	-	76	145597324	YPDSF_R0098	-	^{12 Thr tRNA}
4314982	4315056	-	75	145597324	YPDSF_R0099	-	^{01 Gly tRNA}
4315206	4315290	-	85	145597324	YPDSF_R0100	-	^{18 Tyr tRNA}
4315309	4315384	-	76	145597324	YPDSF_R0101	-	^{12 Thr tRNA}
4340523	4340613	-	91	145597324	YPDSF_R0102	-	Sec tRNA
4456008	4456262	-	255	145597324	YPDSF_R0103	-	regulatory RNA CsrC
4457400	4457507	-	108	145597324	YPDSF_R0104	-	Spot 42 RNA
4465985	4466119	-	135	145597324	YPDSF_R0105	-	5S ribosomal RNA
4466216	4469124	-	2909	145597324	YPDSF_R0106	-	23S ribosomal RNA
4469377	4469452	-	76	145597324	YPDSF_R0107	-	^{04 Glu tRNA}
4469586	4471131	-	1546	145597324	YPDSF_R0108	-	16S ribosomal RNA