Материалы:NC 009512

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009512            5959964 bp    DNA     circular BCT 02-JUL-2007
   DEFINITION  Pseudomonas putida F1, complete genome.
   ACCESSION   NC_009512
   VERSION     NC_009512.1  GI:148545259
   KEYWORDS    .
   SOURCE      Pseudomonas putida F1
     ORGANISM  Pseudomonas putida F1
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Pseudomonadaceae; Pseudomonas.
   REFERENCE   1  (bases 1 to 5959964)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Parales,R. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Pseudomonas putida F1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5959964)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JUN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5959964)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Parales,R. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-MAY-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000712.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000373
               Source DNA and bacteria available from Rebecca Parales
               (reparales@ucdavis.edu)
               Contacts: Rebecca Parales (reparales@ucdavis.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
185124	186672	+	1549	148545259	Pput_R0001	-	16S ribosomal RNA
186953	189855	+	2903	148545259	Pput_R0002	-	23S ribosomal RNA
189979	190094	+	116	148545259	Pput_R0003	-	5S ribosomal RNA
190204	190319	+	116	148545259	Pput_R0004	-	5S ribosomal RNA
265864	265940	-	77	148545259	Pput_R0005	-	^{11 Arg tRNA}
338834	338909	-	76	148545259	Pput_R0006	-	^{12 Thr tRNA}
348720	348795	-	76	148545259	Pput_R0007	-	^{17 Phe tRNA}
482039	482115	-	77	148545259	Pput_R0008	-	^{16 Met tRNA}
539837	541385	+	1549	148545259	Pput_R0009	-	16S ribosomal RNA
541451	541527	+	77	148545259	Pput_R0010	-	^{14 Ile tRNA}
541534	541609	+	76	148545259	Pput_R0011	-	^{02 Ala tRNA}
541844	544746	+	2903	148545259	Pput_R0012	-	23S ribosomal RNA
544881	544996	+	116	148545259	Pput_R0013	-	5S ribosomal RNA
547462	547545	+	84	148545259	Pput_R0014	-	^{18 Tyr tRNA}
547570	547643	+	74	148545259	Pput_R0015	-	^{01 Gly tRNA}
547673	547748	+	76	148545259	Pput_R0016	-	^{12 Thr tRNA}
549075	549150	+	76	148545259	Pput_R0017	-	^{20 Trp tRNA}
717166	718714	+	1549	148545259	Pput_R0018	-	16S ribosomal RNA
718995	721897	+	2903	148545259	Pput_R0019	-	23S ribosomal RNA
722033	722148	+	116	148545259	Pput_R0020	-	5S ribosomal RNA
752653	752728	+	76	148545259	Pput_R0021	-	^{07 Asn tRNA}
752733	752809	+	77	148545259	Pput_R0022	-	^{03 Pro tRNA}
752815	752890	+	76	148545259	Pput_R0023	-	^{10 Lys tRNA}
752937	753013	+	77	148545259	Pput_R0024	-	^{03 Pro tRNA}
753019	753094	+	76	148545259	Pput_R0025	-	^{10 Lys tRNA}
760664	760739	+	76	148545259	Pput_R0026	-	^{12 Thr tRNA}
768920	768991	-	72	148545259	Pput_R0027	-	Xaa tRNA
820486	820562	-	77	148545259	Pput_R0028	-	^{16 Met tRNA}
848700	848774	-	75	148545259	Pput_R0029	-	^{05 Gln tRNA}
983562	983646	-	85	148545259	Pput_R0030	-	^{15 Leu tRNA}
1342813	1344361	+	1549	148545259	Pput_R0031	-	16S ribosomal RNA
1344427	1344503	+	77	148545259	Pput_R0032	-	^{14 Ile tRNA}
1344510	1344585	+	76	148545259	Pput_R0033	-	^{02 Ala tRNA}
1344820	1347722	+	2903	148545259	Pput_R0034	-	23S ribosomal RNA
1347857	1347972	+	116	148545259	Pput_R0035	-	5S ribosomal RNA
1398184	1398260	-	77	148545259	Pput_R0036	-	^{16 Met tRNA}
1398395	1398471	-	77	148545259	Pput_R0037	-	^{16 Met tRNA}
1398606	1398682	-	77	148545259	Pput_R0038	-	^{16 Met tRNA}
1420230	1420305	+	76	148545259	Pput_R0039	-	^{10 Lys tRNA}
1437688	1437777	+	90	148545259	Pput_R0040	-	^{08 Ser tRNA}
1620544	1620634	+	91	148545259	Pput_R0041	-	^{08 Ser tRNA}
1620741	1620817	+	77	148545259	Pput_R0042	-	^{11 Arg tRNA}
1620890	1620966	+	77	148545259	Pput_R0043	-	^{11 Arg tRNA}
1621041	1621117	+	77	148545259	Pput_R0044	-	^{11 Arg tRNA}
1621191	1621267	+	77	148545259	Pput_R0045	-	^{11 Arg tRNA}
1624589	1624665	+	77	148545259	Pput_R0046	-	^{11 Arg tRNA}
1786688	1786804	+	117	148545259	Pput_R0047	-	SRP RNA; RNA component of signal recognition particle
2022122	2022197	+	76	148545259	Pput_R0048	-	^{01 Gly tRNA}
2113660	2113747	+	88	148545259	Pput_R0049	-	^{08 Ser tRNA}
2188877	2188950	+	74	148545259	Pput_R0050	-	^{19 Cys tRNA}
2206571	2206655	-	85	148545259	Pput_R0051	-	^{15 Leu tRNA}
3630810	3630886	-	77	148545259	Pput_R0052	-	^{03 Pro tRNA}
3654686	3654762	-	77	148545259	Pput_R0053	-	^{13 Val tRNA}
3654935	3655011	-	77	148545259	Pput_R0054	-	^{13 Val tRNA}
3766514	3766588	-	75	148545259	Pput_R0055	-	^{05 Gln tRNA}
3877213	3877288	-	76	148545259	Pput_R0056	-	^{09 His tRNA}
3877325	3877409	-	85	148545259	Pput_R0057	-	^{15 Leu tRNA}
3877462	3877537	-	76	148545259	Pput_R0058	-	^{09 His tRNA}
3877579	3877655	-	77	148545259	Pput_R0059	-	^{11 Arg tRNA}
3909594	3909720	-	127	148545259	Pput_R0060	-	5S ribosomal RNA
3909834	3912738	-	2905	148545259	Pput_R0061	-	23S ribosomal RNA
3912980	3913055	-	76	148545259	Pput_R0062	-	^{02 Ala tRNA}
3913080	3913156	-	77	148545259	Pput_R0063	-	^{14 Ile tRNA}
3913241	3914778	-	1538	148545259	Pput_R0064	-	16S ribosomal RNA
4043269	4043345	+	77	148545259	Pput_R0065	-	^{03 Pro tRNA}
4213351	4213427	-	77	148545259	Pput_R0066	-	^{06 Asp tRNA}
4213569	4213645	-	77	148545259	Pput_R0067	-	^{06 Asp tRNA}
4213745	4213821	-	77	148545259	Pput_R0068	-	^{06 Asp tRNA}
4213887	4213962	-	76	148545259	Pput_R0069	-	^{13 Val tRNA}
4242338	4242413	-	76	148545259	Pput_R0070	-	^{04 Glu tRNA}
4242456	4242531	-	76	148545259	Pput_R0071	-	^{02 Ala tRNA}
4242593	4242668	-	76	148545259	Pput_R0072	-	^{04 Glu tRNA}
4242711	4242786	-	76	148545259	Pput_R0073	-	^{02 Ala tRNA}
4242838	4242913	-	76	148545259	Pput_R0074	-	^{04 Glu tRNA}
4242986	4243061	-	76	148545259	Pput_R0075	-	^{02 Ala tRNA}
4251314	4251389	+	76	148545259	Pput_R0076	-	^{07 Asn tRNA}
4316361	4316436	-	76	148545259	Pput_R0077	-	^{01 Gly tRNA}
4316522	4316597	-	76	148545259	Pput_R0078	-	^{01 Gly tRNA}
4316601	4316676	-	76	148545259	Pput_R0079	-	^{04 Glu tRNA}
4316769	4316844	-	76	148545259	Pput_R0080	-	^{01 Gly tRNA}
4316847	4316922	-	76	148545259	Pput_R0081	-	^{04 Glu tRNA}
4347692	4347781	-	90	148545259	Pput_R0082	-	^{08 Ser tRNA}
4531511	4531587	-	77	148545259	Pput_R0083	-	^{06 Asp tRNA}
4531601	4531676	-	76	148545259	Pput_R0084	-	^{13 Val tRNA}
4531847	4531923	-	77	148545259	Pput_R0085	-	^{06 Asp tRNA}
4531937	4532012	-	76	148545259	Pput_R0086	-	^{13 Val tRNA}
4825075	4825148	+	74	148545259	Pput_R0087	-	^{01 Gly tRNA}
4918882	4919176	-	295	148545259	Pput_R0088	-	RNA component of RNaseP
5071220	5071346	-	127	148545259	Pput_R0089	-	5S ribosomal RNA
5071460	5074364	-	2905	148545259	Pput_R0090	-	23S ribosomal RNA
5074606	5074681	-	76	148545259	Pput_R0091	-	^{02 Ala tRNA}
5074706	5074782	-	77	148545259	Pput_R0092	-	^{14 Ile tRNA}
5074867	5076404	-	1538	148545259	Pput_R0093	-	16S ribosomal RNA
5124893	5124969	-	77	148545259	Pput_R0094	-	^{16 Met tRNA}
5125070	5125155	-	86	148545259	Pput_R0095	-	^{15 Leu tRNA}
5154291	5154679	+	389	148545259	Pput_R0096	-	tmRNA
5331494	5331580	+	87	148545259	Pput_R0097	-	^{15 Leu tRNA}
5331669	5331755	+	87	148545259	Pput_R0098	-	^{15 Leu tRNA}