Материалы:NC 009665

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009665            5229686 bp    DNA     circular BCT 25-JUL-2007
   DEFINITION  Shewanella baltica OS185, complete genome.
   ACCESSION   NC_009665
   VERSION     NC_009665.1  GI:152998555
   KEYWORDS    .
   SOURCE      Shewanella baltica OS185
     ORGANISM  Shewanella baltica OS185
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 5229686)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Brettar,I., Rodrigues,J.,
               Konstantinidis,K., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Shewanella baltica OS185
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5229686)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5229686)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Brettar,I., Rodrigues,J.,
               Konstantinidis,K., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JUL-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000753.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4003208
               Source DNA and bacteria available from Jim Tiedje (tiedjej@msu.edu)
               Contacts: Shewanella Federation (shewanella.org)
                         James Tiedje (tiedjej@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
42383	43919	+	1537	152998555	Shew185_R0001	-	16S ribosomal RNA
44288	47190	+	2903	152998555	Shew185_R0002	-	23S ribosomal RNA
47381	47496	+	116	152998555	Shew185_R0003	-	5S ribosomal RNA
47533	47609	+	77	152998555	Shew185_R0004	-	^{06 Asp tRNA}
130486	130576	-	91	152998555	Shew185_R0005	-	Sec tRNA
218430	219966	+	1537	152998555	Shew185_R0006	-	16S ribosomal RNA
220038	220114	+	77	152998555	Shew185_R0007	-	^{14 Ile tRNA}
220252	220327	+	76	152998555	Shew185_R0008	-	^{02 Ala tRNA}
220690	223592	+	2903	152998555	Shew185_R0009	-	23S ribosomal RNA
223731	223846	+	116	152998555	Shew185_R0010	-	5S ribosomal RNA
227237	227312	+	76	152998555	Shew185_R0011	-	^{12 Thr tRNA}
227321	227405	+	85	152998555	Shew185_R0012	-	^{18 Tyr tRNA}
227444	227517	+	74	152998555	Shew185_R0013	-	^{01 Gly tRNA}
227526	227601	+	76	152998555	Shew185_R0014	-	^{12 Thr tRNA}
270089	271625	+	1537	152998555	Shew185_R0015	-	16S ribosomal RNA
271994	274896	+	2903	152998555	Shew185_R0016	-	23S ribosomal RNA
275030	275145	+	116	152998555	Shew185_R0017	-	5S ribosomal RNA
275182	275258	+	77	152998555	Shew185_R0018	-	^{06 Asp tRNA}
461655	463191	+	1537	152998555	Shew185_R0019	-	16S ribosomal RNA
463263	463339	+	77	152998555	Shew185_R0020	-	^{14 Ile tRNA}
463477	463552	+	76	152998555	Shew185_R0021	-	^{02 Ala tRNA}
463915	466817	+	2903	152998555	Shew185_R0022	-	23S ribosomal RNA
467008	467123	+	116	152998555	Shew185_R0023	-	5S ribosomal RNA
467162	467237	+	76	152998555	Shew185_R0024	-	^{12 Thr tRNA}
467275	467390	+	116	152998555	Shew185_R0025	-	5S ribosomal RNA
931640	931726	+	87	152998555	Shew185_R0026	-	^{15 Leu tRNA}
960182	961718	+	1537	152998555	Shew185_R0027	-	16S ribosomal RNA
962087	964989	+	2903	152998555	Shew185_R0028	-	23S ribosomal RNA
965180	965295	+	116	152998555	Shew185_R0029	-	5S ribosomal RNA
1282605	1282691	-	87	152998555	Shew185_R0030	-	^{15 Leu tRNA}
1282778	1282864	-	87	152998555	Shew185_R0031	-	^{15 Leu tRNA}
1282919	1282994	-	76	152998555	Shew185_R0032	-	^{17 Phe tRNA}
1291013	1292549	+	1537	152998555	Shew185_R0033	-	16S ribosomal RNA
1292918	1295819	+	2902	152998555	Shew185_R0034	-	23S ribosomal RNA
1295959	1296074	+	116	152998555	Shew185_R0035	-	5S ribosomal RNA
1424882	1424958	-	77	152998555	Shew185_R0036	-	^{16 Met tRNA}
1547467	1547821	-	355	152998555	Shew185_R0037	-	tmRNA
1928228	1928304	+	77	152998555	Shew185_R0038	-	^{03 Pro tRNA}
1928422	1928498	+	77	152998555	Shew185_R0039	-	^{11 Arg tRNA}
1928508	1928583	+	76	152998555	Shew185_R0040	-	^{09 His tRNA}
1952419	1952534	+	116	152998555	Shew185_R0041	-	SRP RNA; RNA component of signal recognition particle
2097869	2097944	+	76	152998555	Shew185_R0042	-	^{10 Lys tRNA}
2098127	2098202	+	76	152998555	Shew185_R0043	-	^{10 Lys tRNA}
2098264	2098339	+	76	152998555	Shew185_R0044	-	^{10 Lys tRNA}
2098401	2098476	+	76	152998555	Shew185_R0045	-	^{10 Lys tRNA}
2098537	2098612	+	76	152998555	Shew185_R0046	-	^{10 Lys tRNA}
2098651	2098726	+	76	152998555	Shew185_R0047	-	^{10 Lys tRNA}
2098765	2098840	+	76	152998555	Shew185_R0048	-	^{10 Lys tRNA}
2332682	2332769	+	88	152998555	Shew185_R0049	-	^{08 Ser tRNA}
2404481	2404557	+	77	152998555	Shew185_R0050	-	^{06 Asp tRNA}
2479457	2479532	-	76	152998555	Shew185_R0051	-	^{07 Asn tRNA}
2479582	2479657	-	76	152998555	Shew185_R0052	-	^{07 Asn tRNA}
2479701	2479776	-	76	152998555	Shew185_R0053	-	^{07 Asn tRNA}
2479809	2479884	-	76	152998555	Shew185_R0054	-	^{07 Asn tRNA}
2479943	2480018	-	76	152998555	Shew185_R0055	-	^{07 Asn tRNA}
2527569	2527653	-	85	152998555	Shew185_R0056	-	^{18 Tyr tRNA}
2527738	2527822	-	85	152998555	Shew185_R0057	-	^{18 Tyr tRNA}
2527894	2527978	-	85	152998555	Shew185_R0058	-	^{18 Tyr tRNA}
2571986	2572061	+	76	152998555	Shew185_R0059	-	^{01 Gly tRNA}
2572085	2572158	+	74	152998555	Shew185_R0060	-	^{19 Cys tRNA}
2572208	2572294	+	87	152998555	Shew185_R0061	-	^{15 Leu tRNA}
2629515	2629605	-	91	152998555	Shew185_R0062	-	^{08 Ser tRNA}
2651422	2651498	+	77	152998555	Shew185_R0063	-	^{13 Val tRNA}
2651537	2651613	+	77	152998555	Shew185_R0064	-	^{13 Val tRNA}
3070281	3070357	-	77	152998555	Shew185_R0065	-	^{03 Pro tRNA}
3098240	3098326	-	87	152998555	Shew185_R0066	-	^{15 Leu tRNA}
3098467	3098553	-	87	152998555	Shew185_R0067	-	^{15 Leu tRNA}
3098603	3098676	-	74	152998555	Shew185_R0068	-	^{19 Cys tRNA}
3098721	3098796	-	76	152998555	Shew185_R0069	-	^{01 Gly tRNA}
3102608	3102698	-	91	152998555	Shew185_R0070	-	^{08 Ser tRNA}
3103231	3103321	-	91	152998555	Shew185_R0071	-	^{08 Ser tRNA}
3107526	3107616	-	91	152998555	Shew185_R0072	-	^{08 Ser tRNA}
3117065	3117141	+	77	152998555	Shew185_R0073	-	^{16 Met tRNA}
3117183	3117259	+	77	152998555	Shew185_R0074	-	^{16 Met tRNA}
3117403	3117479	+	77	152998555	Shew185_R0075	-	^{16 Met tRNA}
3117527	3117603	+	77	152998555	Shew185_R0076	-	^{16 Met tRNA}
3117748	3117824	+	77	152998555	Shew185_R0077	-	^{16 Met tRNA}
3183294	3183406	-	113	152998555	Shew185_R0078	-	5S ribosomal RNA
3183612	3186514	-	2903	152998555	Shew185_R0079	-	23S ribosomal RNA
3186883	3186958	-	76	152998555	Shew185_R0080	-	^{02 Ala tRNA}
3187096	3187172	-	77	152998555	Shew185_R0081	-	^{14 Ile tRNA}
3187336	3188872	-	1537	152998555	Shew185_R0082	-	16S ribosomal RNA
3380427	3380502	-	76	152998555	Shew185_R0083	-	^{04 Glu tRNA}
3380716	3380791	-	76	152998555	Shew185_R0084	-	^{04 Glu tRNA}
3380910	3380985	-	76	152998555	Shew185_R0085	-	^{04 Glu tRNA}
3381104	3381179	-	76	152998555	Shew185_R0086	-	^{04 Glu tRNA}
3381297	3381372	-	76	152998555	Shew185_R0087	-	^{04 Glu tRNA}
3381507	3381582	-	76	152998555	Shew185_R0088	-	^{02 Ala tRNA}
3381687	3381762	-	76	152998555	Shew185_R0089	-	^{04 Glu tRNA}
3381977	3382052	-	76	152998555	Shew185_R0090	-	^{04 Glu tRNA}
3382186	3382261	-	76	152998555	Shew185_R0091	-	^{02 Ala tRNA}
3384376	3384451	+	76	152998555	Shew185_R0092	-	^{13 Val tRNA}
3384524	3384599	+	76	152998555	Shew185_R0093	-	^{13 Val tRNA}
3384639	3384714	+	76	152998555	Shew185_R0094	-	^{13 Val tRNA}
3384763	3384838	+	76	152998555	Shew185_R0095	-	^{13 Val tRNA}
3384867	3384942	+	76	152998555	Shew185_R0096	-	^{13 Val tRNA}
3384971	3385046	+	76	152998555	Shew185_R0097	-	^{13 Val tRNA}
3385075	3385150	+	76	152998555	Shew185_R0098	-	^{13 Val tRNA}
3553523	3553598	+	76	152998555	Shew185_R0099	-	^{11 Arg tRNA}
3649361	3649436	+	76	152998555	Shew185_R0100	-	^{17 Phe tRNA}
3649458	3649533	+	76	152998555	Shew185_R0101	-	^{12 Thr tRNA}
3650068	3650143	+	76	152998555	Shew185_R0102	-	^{17 Phe tRNA}
3650151	3650226	+	76	152998555	Shew185_R0103	-	^{12 Thr tRNA}
3721545	3721621	-	77	152998555	Shew185_R0104	-	^{11 Arg tRNA}
3721725	3721816	-	92	152998555	Shew185_R0105	-	^{08 Ser tRNA}
3721862	3721938	-	77	152998555	Shew185_R0106	-	^{11 Arg tRNA}
3721997	3722073	-	77	152998555	Shew185_R0107	-	^{11 Arg tRNA}
3722122	3722198	-	77	152998555	Shew185_R0108	-	^{11 Arg tRNA}
3722286	3722362	-	77	152998555	Shew185_R0109	-	^{11 Arg tRNA}
3722397	3722473	-	77	152998555	Shew185_R0110	-	^{11 Arg tRNA}
3722496	3722587	-	92	152998555	Shew185_R0111	-	^{08 Ser tRNA}
3914518	3914594	-	77	152998555	Shew185_R0112	-	^{16 Met tRNA}
3914677	3914763	-	87	152998555	Shew185_R0113	-	^{15 Leu tRNA}
3930415	3930489	-	75	152998555	Shew185_R0114	-	^{05 Gln tRNA}
3930529	3930613	-	85	152998555	Shew185_R0115	-	^{15 Leu tRNA}
3930689	3930765	-	77	152998555	Shew185_R0116	-	^{16 Met tRNA}
3930767	3930841	-	75	152998555	Shew185_R0117	-	^{05 Gln tRNA}
3930866	3930940	-	75	152998555	Shew185_R0118	-	^{05 Gln tRNA}
3931016	3931100	-	85	152998555	Shew185_R0119	-	^{15 Leu tRNA}
3931196	3931272	-	77	152998555	Shew185_R0120	-	^{16 Met tRNA}
4019246	4019322	-	77	152998555	Shew185_R0121	-	^{20 Trp tRNA}
4483987	4484062	-	76	152998555	Shew185_R0122	-	^{01 Gly tRNA}
4484105	4484180	-	76	152998555	Shew185_R0123	-	^{01 Gly tRNA}
4484223	4484298	-	76	152998555	Shew185_R0124	-	^{01 Gly tRNA}
4484341	4484416	-	76	152998555	Shew185_R0125	-	^{01 Gly tRNA}
4655205	4655281	-	77	152998555	Shew185_R0126	-	^{06 Asp tRNA}
4655318	4655433	-	116	152998555	Shew185_R0127	-	5S ribosomal RNA
4655624	4658526	-	2903	152998555	Shew185_R0128	-	23S ribosomal RNA
4658890	4660426	-	1537	152998555	Shew185_R0129	-	16S ribosomal RNA
4761763	4761839	-	77	152998555	Shew185_R0130	-	^{03 Pro tRNA}
4761896	4761972	-	77	152998555	Shew185_R0131	-	^{03 Pro tRNA}
4762006	4762081	-	76	152998555	Shew185_R0132	-	^{09 His tRNA}
4762135	4762211	-	77	152998555	Shew185_R0133	-	^{11 Arg tRNA}
4851309	4851606	-	298	152998555	Shew185_R0134	-	RNA component of RNaseP
4884842	4884957	-	116	152998555	Shew185_R0135	-	5S ribosomal RNA
4885143	4888045	-	2903	152998555	Shew185_R0136	-	23S ribosomal RNA
4888415	4889951	-	1537	152998555	Shew185_R0137	-	16S ribosomal RNA
5197096	5197211	-	116	152998555	Shew185_R0138	-	5S ribosomal RNA
5197402	5200304	-	2903	152998555	Shew185_R0139	-	23S ribosomal RNA
5200668	5202204	-	1537	152998555	Shew185_R0140	-	16S ribosomal RNA