Материалы:NC 009708

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009708            4723306 bp    DNA     circular BCT 19-SEP-2007
   DEFINITION  Yersinia pseudotuberculosis IP 31758, complete genome.
   ACCESSION   NC_009708
   VERSION     NC_009708.1  GI:153946813
   KEYWORDS    .
   SOURCE      Yersinia pseudotuberculosis IP 31758
     ORGANISM  Yersinia pseudotuberculosis IP 31758
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Yersinia.
   REFERENCE   1  (bases 1 to 4723306)
     AUTHORS   Eppinger,M., Rosovitz,M.J., Fricke,W.F., Rasko,D.A., Kokorina,G.,
               Fayolle,C., Lindler,L.E., Carniel,E. and Ravel,J.
     TITLE     The complete genome sequence of Yersinia pseudotuberculosis
               IP31758, the causative agent of Far East scarlet-like fever
     JOURNAL   PLoS Genet. 3 (8), E142 (2007)
      PUBMED   17784789
   REFERENCE   2  (bases 1 to 4723306)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (26-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4723306)
     AUTHORS   Eppinger,M., Rosovitz,M., Fricke,W.W., Rasko,D.A., Lindler,L.E.,
               Carniel,E. and Ravel,J.
     TITLE     Direct Submission
     JOURNAL   Submitted (05-JUN-2007) Microbial Genomics and Pathogen Functional
               Genomic Resource Center, J. Craig Venter Institute, 9712 Medical
               Center Drive, Rockville, MD 20850, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000720.
               Inquiries for DNA can be made to Elizabeth Carniel
               (carniel2@pasteur.fr).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
12000	13542	+	1543	153946813	YpsIP31758_4189	-	16S ribosomal RNA
13678	13755	+	78	153946813	YpsIP31758_4190	-	^{04 Glu tRNA}
14007	16913	+	2907	153946813	YpsIP31758_4191	-	23S ribosomal RNA
17021	17140	+	120	153946813	YpsIP31758_4192	-	5S ribosomal RNA
25613	25730	+	118	153946813	YpsIP31758_4297	-	Spot 42 RNA
26868	27121	+	254	153946813	YpsIP31758_4298	-	CsrC RNA family
159777	161319	+	1543	153946813	YpsIP31758_4193	-	16S ribosomal RNA
161455	161532	+	78	153946813	YpsIP31758_4194	-	^{04 Glu tRNA}
161784	164690	+	2907	153946813	YpsIP31758_4195	-	23S ribosomal RNA
164798	164917	+	120	153946813	YpsIP31758_4196	-	5S ribosomal RNA
165040	165118	+	79	153946813	YpsIP31758_4197	-	^{06 Asp tRNA}
165125	165202	+	78	153946813	YpsIP31758_4198	-	^{20 Trp tRNA}
221179	221255	+	77	153946813	YpsIP31758_4199	-	^{11 Arg tRNA}
221338	221415	+	78	153946813	YpsIP31758_4200	-	^{09 His tRNA}
221430	221518	+	89	153946813	YpsIP31758_4201	-	^{15 Leu tRNA}
221592	221670	+	79	153946813	YpsIP31758_4202	-	^{03 Pro tRNA}
322792	324334	+	1543	153946813	YpsIP31758_4203	-	16S ribosomal RNA
324436	324514	+	79	153946813	YpsIP31758_4204	-	^{14 Ile tRNA}
324564	324641	+	78	153946813	YpsIP31758_4205	-	^{02 Ala tRNA}
324859	327765	+	2907	153946813	YpsIP31758_4206	-	23S ribosomal RNA
327875	327990	+	116	153946813	YpsIP31758_4300	-	5S ribosomal RNA
328005	328082	+	78	153946813	YpsIP31758_4207	-	^{12 Thr tRNA}
328120	328239	+	120	153946813	YpsIP31758_4208	-	5S ribosomal RNA
547912	548024	-	113	153946813	YpsIP31758_4301	-	SraH RNA
554644	554946	+	303	153946813	YpsIP31758_4302	-	RNase P class A
649301	649379	-	79	153946813	YpsIP31758_4209	-	^{16 Met tRNA}
977582	977659	-	78	153946813	YpsIP31758_4210	-	^{17 Phe tRNA}
1037218	1037399	-	182	153946813	YpsIP31758_4304	-	6S / SsrS RNA
1068026	1068099	+	74	153946813	YpsIP31758_4211	-	^{01 Gly tRNA}
1165923	1166017	+	95	153946813	YpsIP31758_4305	-	sraE/rygA/rygB family RNA
1195603	1195679	-	77	153946813	YpsIP31758_4212	-	^{16 Met tRNA}
1195740	1195816	-	77	153946813	YpsIP31758_4213	-	^{16 Met tRNA}
1195984	1196060	-	77	153946813	YpsIP31758_4214	-	^{16 Met tRNA}
1200711	1200817	-	107	153946813	YpsIP31758_4306	-	gcvB RNA
1208063	1208385	+	323	153946813	YpsIP31758_4307	-	CsrB/RsmB RNA family
1215459	1215665	+	207	153946813	YpsIP31758_4308	-	t44 RNA
1247810	1249364	+	1555	153946813	YpsIP31758_4215	-	16S ribosomal RNA
1249488	1249565	+	78	153946813	YpsIP31758_4216	-	^{04 Glu tRNA}
1249817	1252723	+	2907	153946813	YpsIP31758_4217	-	23S ribosomal RNA
1252831	1252950	+	120	153946813	YpsIP31758_4218	-	5S ribosomal RNA
1253073	1253151	+	79	153946813	YpsIP31758_4219	-	^{06 Asp tRNA}
1260509	1260587	+	79	153946813	YpsIP31758_4220	-	^{06 Asp tRNA}
1353391	1353555	-	165	153946813	YpsIP31758_4309	-	tke1 RNA
1418759	1418844	-	86	153946813	YpsIP31758_4311	-	RyeE RNA
1550997	1551074	-	78	153946813	YpsIP31758_4221	-	^{02 Ala tRNA}
1551150	1551227	-	78	153946813	YpsIP31758_4222	-	^{02 Ala tRNA}
1553148	1553223	+	76	153946813	YpsIP31758_4223	-	^{13 Val tRNA}
1553260	1553335	+	76	153946813	YpsIP31758_4224	-	^{13 Val tRNA}
1553379	1553456	+	78	153946813	YpsIP31758_4225	-	^{13 Val tRNA}
1553654	1553731	+	78	153946813	YpsIP31758_4226	-	^{10 Lys tRNA}
1622954	1623028	+	75	153946813	YpsIP31758_4227	-	^{11 Arg tRNA}
2008789	2008897	-	109	153946813	YpsIP31758_4312	-	rprA RNA
2025240	2025318	-	79	153946813	YpsIP31758_4228	-	^{13 Val tRNA}
2025467	2025545	-	79	153946813	YpsIP31758_4229	-	^{13 Val tRNA}
2025603	2025681	-	79	153946813	YpsIP31758_4230	-	^{13 Val tRNA}
2063571	2063671	+	101	153946813	YpsIP31758_4313	-	RyhB RNA
2275524	2275610	+	87	153946813	YpsIP31758_4231	-	^{18 Tyr tRNA}
2275674	2275760	+	87	153946813	YpsIP31758_4232	-	^{18 Tyr tRNA}
2366861	2366952	+	92	153946813	YpsIP31758_4233	-	^{08 Ser tRNA}
2374510	2374601	+	92	153946813	YpsIP31758_4234	-	^{08 Ser tRNA}
2494338	2494415	+	78	153946813	YpsIP31758_4235	-	^{07 Asn tRNA}
2557109	2557194	-	86	153946813	YpsIP31758_4236	-	^{15 Leu tRNA}
2557204	2557279	-	76	153946813	YpsIP31758_4237	-	^{19 Cys tRNA}
2557331	2557406	-	76	153946813	YpsIP31758_4238	-	^{01 Gly tRNA}
2563856	2563933	-	78	153946813	YpsIP31758_4239	-	^{10 Lys tRNA}
2639150	2639399	+	250	153946813	YpsIP31758_4314	-	sraC/ryeA RNA
2639187	2639288	-	102	153946813	YpsIP31758_4315	-	RyeB RNA
2693239	2693316	+	78	153946813	YpsIP31758_4240	-	^{07 Asn tRNA}
2704257	2704334	+	78	153946813	YpsIP31758_4241	-	^{07 Asn tRNA}
2861232	2861321	-	90	153946813	YpsIP31758_4242	-	^{08 Ser tRNA}
2873877	2873946	+	70	153946813	YpsIP31758_4316	-	RNA-OUT
3004582	3004662	+	81	153946813	YpsIP31758_4317	-	rybB RNA
3079302	3079380	+	79	153946813	YpsIP31758_4243	-	^{03 Pro tRNA}
3111104	3111179	-	76	153946813	YpsIP31758_4244	-	^{12 Thr tRNA}
3111184	3111273	-	90	153946813	YpsIP31758_4245	-	^{08 Ser tRNA}
3114232	3114318	+	87	153946813	YpsIP31758_4318	-	micF RNA
3235183	3235253	-	71	153946813	YpsIP31758_4246	-
3235350	3235420	-	71	153946813	YpsIP31758_4247	-	^{10 Lys tRNA}
3235517	3235587	-	71	153946813	YpsIP31758_4248	-	^{10 Lys tRNA}
3235684	3235754	-	71	153946813	YpsIP31758_4249	-
3235782	3235857	-	76	153946813	YpsIP31758_4250	-	^{10 Lys tRNA}
3235885	3235960	-	76	153946813	YpsIP31758_4251	-	^{10 Lys tRNA}
3235988	3236063	-	76	153946813	YpsIP31758_4252	-	^{10 Lys tRNA}
3236090	3236167	-	78	153946813	YpsIP31758_4253	-	^{10 Lys tRNA}
3263983	3264346	+	364	153946813	YpsIP31758_4254	-	10Sa RNA (tmRNA)
3286365	3286443	+	79	153946813	YpsIP31758_4255	-	^{16 Met tRNA}
3286449	3286535	+	87	153946813	YpsIP31758_4256	-	^{15 Leu tRNA}
3286564	3286638	+	75	153946813	YpsIP31758_4257	-	^{05 Gln tRNA}
3286721	3286797	+	77	153946813	YpsIP31758_4258	-	^{05 Gln tRNA}
3286828	3286906	+	79	153946813	YpsIP31758_4259	-	^{16 Met tRNA}
3286910	3286986	+	77	153946813	YpsIP31758_4260	-	^{05 Gln tRNA}
3391250	3391328	-	79	153946813	YpsIP31758_4261	-	^{11 Arg tRNA}
3409729	3409812	-	84	153946813	YpsIP31758_4321	-	sroB RNA
3460689	3460788	-	100	153946813	YpsIP31758_4322	-	bacterial signal recognition particle RNA
3612672	3612791	-	120	153946813	YpsIP31758_4262	-	5S ribosomal RNA
3612899	3615805	-	2907	153946813	YpsIP31758_4263	-	23S ribosomal RNA
3616023	3616100	-	78	153946813	YpsIP31758_4264	-	^{02 Ala tRNA}
3616150	3616228	-	79	153946813	YpsIP31758_4265	-	^{14 Ile tRNA}
3616318	3617872	-	1555	153946813	YpsIP31758_4266	-	16S ribosomal RNA
3639626	3639700	+	75	153946813	YpsIP31758_4323	-	sraD RNA
3642656	3642727	-	72	153946813	YpsIP31758_4267	-
3642806	3642884	-	79	153946813	YpsIP31758_4268	-	^{11 Arg tRNA}
3642962	3643040	-	79	153946813	YpsIP31758_4269	-	^{11 Arg tRNA}
3643096	3643174	-	79	153946813	YpsIP31758_4270	-	^{11 Arg tRNA}
3643181	3643275	-	95	153946813	YpsIP31758_4271	-	^{08 Ser tRNA}
3958156	3958242	+	87	153946813	YpsIP31758_4272	-	^{15 Leu tRNA}
3958338	3958426	+	89	153946813	YpsIP31758_4273	-	^{15 Leu tRNA}
3958539	3958625	+	87	153946813	YpsIP31758_4274	-	^{15 Leu tRNA}
4000577	4000663	-	87	153946813	YpsIP31758_4275	-	^{15 Leu tRNA}
4057624	4057805	+	182	153946813	YpsIP31758_4325	-	SraG RNA
4058035	4058153	-	119	153946813	YpsIP31758_4326	-	Ribosomal S15 leader
4064543	4064619	-	77	153946813	YpsIP31758_4276	-	^{16 Met tRNA}
4064679	4064767	-	89	153946813	YpsIP31758_4277	-	^{15 Leu tRNA}
4126771	4126846	-	76	153946813	YpsIP31758_4278	-	^{01 Gly tRNA}
4126914	4126989	-	76	153946813	YpsIP31758_4279	-	^{01 Gly tRNA}
4127080	4127157	-	78	153946813	YpsIP31758_4280	-	^{01 Gly tRNA}
4157183	4157260	+	78	153946813	YpsIP31758_4281	-	^{17 Phe tRNA}
4323713	4323832	-	120	153946813	YpsIP31758_4282	-	5S ribosomal RNA
4323940	4326846	-	2907	153946813	YpsIP31758_4283	-	23S ribosomal RNA
4327097	4327174	-	78	153946813	YpsIP31758_4284	-	^{04 Glu tRNA}
4327298	4328852	-	1555	153946813	YpsIP31758_4285	-	16S ribosomal RNA
4359497	4359574	-	78	153946813	YpsIP31758_4286	-	^{12 Thr tRNA}
4359580	4359654	-	75	153946813	YpsIP31758_4287	-	^{01 Gly tRNA}
4359804	4359888	-	85	153946813	YpsIP31758_4288	-	^{18 Tyr tRNA}
4359906	4359983	-	78	153946813	YpsIP31758_4289	-	^{12 Thr tRNA}
4365284	4365403	-	120	153946813	YpsIP31758_4290	-	5S ribosomal RNA
4365511	4368417	-	2907	153946813	YpsIP31758_4291	-	23S ribosomal RNA
4368635	4368712	-	78	153946813	YpsIP31758_4292	-	^{02 Ala tRNA}
4368762	4368840	-	79	153946813	YpsIP31758_4293	-	^{14 Ile tRNA}
4368930	4370484	-	1555	153946813	YpsIP31758_4294	-	16S ribosomal RNA
4530557	4530660	-	104	153946813	YpsIP31758_4329	-	RyhB RNA
4597616	4597694	-	79	153946813	YpsIP31758_4295	-	^{03 Pro tRNA}
4621124	4621218	-	95	153946813	YpsIP31758_4296	-	Sec tRNA