Материалы:NC 009832

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009832            5448853 bp    DNA     circular BCT 20-SEP-2007
   DEFINITION  Serratia proteamaculans 568, complete genome.
   ACCESSION   NC_009832
   VERSION     NC_009832.1  GI:157368249
   KEYWORDS    .
   SOURCE      Serratia proteamaculans 568
     ORGANISM  Serratia proteamaculans 568
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Serratia.
   REFERENCE   1  (bases 1 to 5448853)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M.,
               Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Taghavi,S., Newman,L., Vangronsveld,J., van der Lelie,D.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Serratia proteamaculans 568
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5448853)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (19-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5448853)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M.,
               Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Taghavi,S., Newman,L., Vangronsveld,J., van der Lelie,D.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (12-SEP-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000826.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002719
               Source DNA and bacteria available from Daniel van der Lelie
               (vdlelied@bnl.gov)
               Contacts: Daniel van der Lelie (vdlelied@bnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
116207	116297	+	91	157368249	Spro_R0001	-	Sec tRNA
144755	144831	+	77	157368249	Spro_R0002	-	^{03 Pro tRNA}
196987	197063	+	77	157368249	Spro_R0003	-	^{11 Arg tRNA}
197123	197198	+	76	157368249	Spro_R0004	-	^{09 His tRNA}
197242	197328	+	87	157368249	Spro_R0005	-	^{15 Leu tRNA}
197405	197481	+	77	157368249	Spro_R0006	-	^{03 Pro tRNA}
298569	300103	+	1535	157368249	Spro_R0007	-	16S ribosomal RNA
300248	300323	+	76	157368249	Spro_R0008	-	^{04 Glu tRNA}
300559	303468	+	2910	157368249	Spro_R0009	-	23S ribosomal RNA
303567	303682	+	116	157368249	Spro_R0010	-	5S ribosomal RNA
307568	307643	+	76	157368249	Spro_R0011	-	^{12 Thr tRNA}
307668	307752	+	85	157368249	Spro_R0012	-	^{18 Tyr tRNA}
307952	308026	+	75	157368249	Spro_R0013	-	^{01 Gly tRNA}
308033	308108	+	76	157368249	Spro_R0014	-	^{12 Thr tRNA}
336532	338066	+	1535	157368249	Spro_R0015	-	16S ribosomal RNA
338141	338217	+	77	157368249	Spro_R0016	-	^{14 Ile tRNA}
338255	338330	+	76	157368249	Spro_R0017	-	^{02 Ala tRNA}
338536	341444	+	2909	157368249	Spro_R0018	-	23S ribosomal RNA
341546	341661	+	116	157368249	Spro_R0019	-	5S ribosomal RNA
355873	355948	-	76	157368249	Spro_R0020	-	^{17 Phe tRNA}
451284	451359	-	76	157368249	Spro_R0021	-	^{17 Phe tRNA}
474644	474719	+	76	157368249	Spro_R0022	-	^{01 Gly tRNA}
474784	474859	+	76	157368249	Spro_R0023	-	^{01 Gly tRNA}
474915	474990	+	76	157368249	Spro_R0024	-	^{01 Gly tRNA}
537028	537114	+	87	157368249	Spro_R0025	-	^{15 Leu tRNA}
537175	537251	+	77	157368249	Spro_R0026	-	^{16 Met tRNA}
627171	627255	+	85	157368249	Spro_R0027	-	^{15 Leu tRNA}
711848	711934	-	87	157368249	Spro_R0028	-	^{15 Leu tRNA}
711978	712064	-	87	157368249	Spro_R0029	-	^{15 Leu tRNA}
712099	712185	-	87	157368249	Spro_R0030	-	^{15 Leu tRNA}
942212	942304	+	93	157368249	Spro_R0031	-	^{08 Ser tRNA}
942308	942384	+	77	157368249	Spro_R0032	-	^{11 Arg tRNA}
942446	942522	+	77	157368249	Spro_R0033	-	^{11 Arg tRNA}
942573	942649	+	77	157368249	Spro_R0034	-	^{11 Arg tRNA}
983450	984984	+	1535	157368249	Spro_R0035	-	16S ribosomal RNA
985129	985204	+	76	157368249	Spro_R0036	-	^{04 Glu tRNA}
985440	988349	+	2910	157368249	Spro_R0037	-	23S ribosomal RNA
988448	988563	+	116	157368249	Spro_R0038	-	5S ribosomal RNA
988658	988734	+	77	157368249	Spro_R0039	-	^{06 Asp tRNA}
1011798	1011874	+	77	157368249	Spro_R0040	-	^{06 Asp tRNA}
1225835	1225951	+	117	157368249	Spro_R0041	-	SRP RNA; RNA component of signal recognition particle
1286581	1286657	+	77	157368249	Spro_R0042	-	^{11 Arg tRNA}
1339316	1339390	-	75	157368249	Spro_R0043	-	^{05 Gln tRNA}
1339410	1339486	-	77	157368249	Spro_R0044	-	^{16 Met tRNA}
1339525	1339599	-	75	157368249	Spro_R0045	-	^{05 Gln tRNA}
1339647	1339721	-	75	157368249	Spro_R0046	-	^{05 Gln tRNA}
1339751	1339835	-	85	157368249	Spro_R0047	-	^{15 Leu tRNA}
1339846	1339922	-	77	157368249	Spro_R0048	-	^{16 Met tRNA}
1408541	1408616	+	76	157368249	Spro_R0049	-	^{10 Lys tRNA}
1408649	1408724	+	76	157368249	Spro_R0050	-	^{13 Val tRNA}
1408732	1408807	+	76	157368249	Spro_R0051	-	^{10 Lys tRNA}
1408878	1408953	+	76	157368249	Spro_R0052	-	^{10 Lys tRNA}
1409007	1409082	+	76	157368249	Spro_R0053	-	^{10 Lys tRNA}
1946172	1946259	+	88	157368249	Spro_R0054	-	^{08 Ser tRNA}
2034897	2034972	+	76	157368249	Spro_R0055	-	^{01 Gly tRNA}
2035030	2035103	+	74	157368249	Spro_R0056	-	^{19 Cys tRNA}
2035114	2035199	+	86	157368249	Spro_R0057	-	^{15 Leu tRNA}
2050388	2050482	+	95	157368249	Spro_R0058	-	Xaa tRNA
2115712	2115801	-	90	157368249	Spro_R0059	-	^{08 Ser tRNA}
2116023	2116112	-	90	157368249	Spro_R0060	-	^{08 Ser tRNA}
2390331	2390407	-	77	157368249	Spro_R0061	-	^{13 Val tRNA}
2390429	2390505	-	77	157368249	Spro_R0062	-	^{13 Val tRNA}
2390527	2390603	-	77	157368249	Spro_R0063	-	^{13 Val tRNA}
2990610	2990694	+	85	157368249	Spro_R0064	-	^{18 Tyr tRNA}
2990791	2990875	+	85	157368249	Spro_R0065	-	^{18 Tyr tRNA}
3421738	3421827	-	90	157368249	Spro_R0066	-	^{08 Ser tRNA}
3422811	3422886	+	76	157368249	Spro_R0067	-	^{07 Asn tRNA}
3447048	3447123	+	76	157368249	Spro_R0068	-	^{07 Asn tRNA}
3494641	3494716	+	76	157368249	Spro_R0069	-	^{07 Asn tRNA}
3528610	3528685	+	76	157368249	Spro_R0070	-	^{07 Asn tRNA}
3593930	3594006	+	77	157368249	Spro_R0071	-	^{03 Pro tRNA}
3594665	3594740	-	76	157368249	Spro_R0072	-	^{12 Thr tRNA}
3594747	3594834	-	88	157368249	Spro_R0073	-	^{08 Ser tRNA}
3752729	3752803	+	75	157368249	Spro_R0074	-	^{11 Arg tRNA}
3779490	3779565	-	76	157368249	Spro_R0075	-	^{02 Ala tRNA}
3779626	3779701	-	76	157368249	Spro_R0076	-	^{02 Ala tRNA}
3781664	3781739	+	76	157368249	Spro_R0077	-	^{13 Val tRNA}
3781780	3781855	+	76	157368249	Spro_R0078	-	^{13 Val tRNA}
3781895	3781970	+	76	157368249	Spro_R0079	-	^{13 Val tRNA}
3781978	3782053	+	76	157368249	Spro_R0080	-	^{10 Lys tRNA}
4081920	4082299	+	380	157368249	Spro_R0081	-	tmRNA
4143910	4144025	-	116	157368249	Spro_R0082	-	5S ribosomal RNA
4144123	4147031	-	2909	157368249	Spro_R0083	-	23S ribosomal RNA
4147237	4147312	-	76	157368249	Spro_R0084	-	^{02 Ala tRNA}
4147350	4147426	-	77	157368249	Spro_R0085	-	^{14 Ile tRNA}
4147501	4149035	-	1535	157368249	Spro_R0086	-	16S ribosomal RNA
4210718	4210794	+	77	157368249	Spro_R0087	-	^{16 Met tRNA}
4210862	4210938	+	77	157368249	Spro_R0088	-	^{16 Met tRNA}
4211003	4211079	+	77	157368249	Spro_R0089	-	^{16 Met tRNA}
4307337	4307410	-	74	157368249	Spro_R0090	-	^{01 Gly tRNA}
4486593	4486668	+	76	157368249	Spro_R0091	-	^{17 Phe tRNA}
4769981	4770057	+	77	157368249	Spro_R0092	-	^{16 Met tRNA}
4802652	4802954	-	303	157368249	Spro_R0093	-	RNA component of RNaseP
4993782	4993857	-	76	157368249	Spro_R0094	-	^{12 Thr tRNA}
4993871	4993986	-	116	157368249	Spro_R0095	-	5S ribosomal RNA
4994085	4996993	-	2909	157368249	Spro_R0096	-	23S ribosomal RNA
4997229	4997304	-	76	157368249	Spro_R0097	-	^{04 Glu tRNA}
4997449	4998983	-	1535	157368249	Spro_R0098	-	16S ribosomal RNA
5276550	5276625	-	76	157368249	Spro_R0099	-	^{20 Trp tRNA}
5276679	5276755	-	77	157368249	Spro_R0100	-	^{06 Asp tRNA}
5276850	5276965	-	116	157368249	Spro_R0101	-	5S ribosomal RNA
5277064	5279973	-	2910	157368249	Spro_R0102	-	23S ribosomal RNA
5280167	5280242	-	76	157368249	Spro_R0103	-	^{02 Ala tRNA}
5280367	5280443	-	77	157368249	Spro_R0104	-	^{14 Ile tRNA}
5280547	5282081	-	1535	157368249	Spro_R0105	-	16S ribosomal RNA
5424656	5424771	-	116	157368249	Spro_R0106	-	5S ribosomal RNA
5424869	5427778	-	2910	157368249	Spro_R0107	-	23S ribosomal RNA
5428014	5428089	-	76	157368249	Spro_R0108	-	^{04 Glu tRNA}
5428234	5429768	-	1535	157368249	Spro_R0109	-	16S ribosomal RNA