Материалы:NC 009901

Вы находитесь в Инкубаторе

Это исходный материал (как правило загружен ботом)

Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009901            5174581 bp    DNA     circular BCT 09-OCT-2007
   DEFINITION  Shewanella pealeana ATCC 700345, complete genome.
   ACCESSION   NC_009901
   VERSION     NC_009901.1  GI:157959830
   KEYWORDS    .
   SOURCE      Shewanella pealeana ATCC 700345
     ORGANISM  Shewanella pealeana ATCC 700345
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 5174581)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Zhao,J.-S.Z., Manno,D., Hawari,J. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella pealeana ATCC 700345
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5174581)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (09-OCT-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5174581)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Zhao,J.-S.Z., Manno,D., Hawari,J. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (02-OCT-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000851.
               URL -- http://www.jgi.doe.gov
               JGI Project ID:  4002761
               Source DNA and bacteria available from Jian-Shen Zhao
               (jian-shen.zhao@cnrc-nrc.gc.ca)
               Contacts: Jian-Shen Zhao (jian-shen.zhao@cnrc-nrc.gc.ca)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
45147	46681	+	1535	157959830	Spea_R0001	-	16S ribosomal RNA
47032	49926	+	2895	157959830	Spea_R0002	-	23S ribosomal RNA
50059	50174	+	116	157959830	Spea_R0003	-	5S ribosomal RNA
51501	53035	+	1535	157959830	Spea_R0004	-	16S ribosomal RNA
53386	56280	+	2895	157959830	Spea_R0005	-	23S ribosomal RNA
56413	56528	+	116	157959830	Spea_R0006	-	5S ribosomal RNA
182282	183816	+	1535	157959830	Spea_R0007	-	16S ribosomal RNA
183892	183968	+	77	157959830	Spea_R0008	-	^{14 Ile tRNA}
184034	184109	+	76	157959830	Spea_R0009	-	^{02 Ala tRNA}
184481	187375	+	2895	157959830	Spea_R0010	-	23S ribosomal RNA
187508	187623	+	116	157959830	Spea_R0011	-	5S ribosomal RNA
187724	187800	+	77	157959830	Spea_R0012	-	^{06 Asp tRNA}
191614	191689	+	76	157959830	Spea_R0013	-	^{12 Thr tRNA}
191698	191782	+	85	157959830	Spea_R0014	-	^{18 Tyr tRNA}
191818	191891	+	74	157959830	Spea_R0015	-	^{01 Gly tRNA}
235193	236727	+	1535	157959830	Spea_R0016	-	16S ribosomal RNA
237113	240007	+	2895	157959830	Spea_R0017	-	23S ribosomal RNA
240140	240255	+	116	157959830	Spea_R0018	-	5S ribosomal RNA
243642	245176	+	1535	157959830	Spea_R0019	-	16S ribosomal RNA
245526	248420	+	2895	157959830	Spea_R0020	-	23S ribosomal RNA
248554	248669	+	116	157959830	Spea_R0021	-	5S ribosomal RNA
248738	248813	+	76	157959830	Spea_R0022	-	^{12 Thr tRNA}
248831	248946	+	116	157959830	Spea_R0023	-	5S ribosomal RNA
283442	283739	+	298	157959830	Spea_R0024	-	misc_RNA
416766	416842	+	77	157959830	Spea_R0025	-	^{11 Arg tRNA}
416882	416957	+	76	157959830	Spea_R0026	-	^{09 His tRNA}
416999	417075	+	77	157959830	Spea_R0027	-	^{03 Pro tRNA}
417134	417210	+	77	157959830	Spea_R0028	-	^{03 Pro tRNA}
493722	495256	+	1535	157959830	Spea_R0029	-	16S ribosomal RNA
495607	498501	+	2895	157959830	Spea_R0030	-	23S ribosomal RNA
498634	498749	+	116	157959830	Spea_R0031	-	5S ribosomal RNA
552634	552724	-	91	157959830	Spea_R0032	-	Sec tRNA
641376	641466	+	91	157959830	Spea_R0033	-	^{08 Ser tRNA}
642639	642729	+	91	157959830	Spea_R0034	-	^{08 Ser tRNA}
645858	647392	+	1535	157959830	Spea_R0035	-	16S ribosomal RNA
647468	647544	+	77	157959830	Spea_R0036	-	^{14 Ile tRNA}
647610	647685	+	76	157959830	Spea_R0037	-	^{02 Ala tRNA}
648022	650916	+	2895	157959830	Spea_R0038	-	23S ribosomal RNA
651094	651209	+	116	157959830	Spea_R0039	-	5S ribosomal RNA
728115	728199	+	85	157959830	Spea_R0040	-	^{15 Leu tRNA}
1168942	1169018	-	77	157959830	Spea_R0041	-	^{16 Met tRNA}
1339706	1339781	-	76	157959830	Spea_R0042	-	^{12 Thr tRNA}
1339834	1339909	-	76	157959830	Spea_R0043	-	^{17 Phe tRNA}
1340449	1340524	-	76	157959830	Spea_R0044	-	^{12 Thr tRNA}
1340577	1340652	-	76	157959830	Spea_R0045	-	^{17 Phe tRNA}
1342467	1342542	-	76	157959830	Spea_R0046	-	^{12 Thr tRNA}
1342595	1342670	-	76	157959830	Spea_R0047	-	^{17 Phe tRNA}
1456724	1456815	+	92	157959830	Spea_R0048	-	^{08 Ser tRNA}
1456837	1456913	+	77	157959830	Spea_R0049	-	^{11 Arg tRNA}
1456944	1457020	+	77	157959830	Spea_R0050	-	^{11 Arg tRNA}
1457053	1457129	+	77	157959830	Spea_R0051	-	^{11 Arg tRNA}
1457160	1457236	+	77	157959830	Spea_R0052	-	^{11 Arg tRNA}
1457270	1457346	+	77	157959830	Spea_R0053	-	^{11 Arg tRNA}
1457356	1457447	+	92	157959830	Spea_R0054	-	^{08 Ser tRNA}
1457524	1457600	+	77	157959830	Spea_R0055	-	^{11 Arg tRNA}
1457636	1457712	+	77	157959830	Spea_R0056	-	^{11 Arg tRNA}
1457722	1457813	+	92	157959830	Spea_R0057	-	^{08 Ser tRNA}
1566140	1566494	-	355	157959830	Spea_R0058	-	tmRNA
1627363	1627438	-	76	157959830	Spea_R0059	-	^{11 Arg tRNA}
1770483	1770558	-	76	157959830	Spea_R0060	-	^{13 Val tRNA}
1770596	1770671	-	76	157959830	Spea_R0061	-	^{13 Val tRNA}
1770709	1770784	-	76	157959830	Spea_R0062	-	^{13 Val tRNA}
1770822	1770897	-	76	157959830	Spea_R0063	-	^{13 Val tRNA}
1770935	1771010	-	76	157959830	Spea_R0064	-	^{13 Val tRNA}
1771048	1771123	-	76	157959830	Spea_R0065	-	^{13 Val tRNA}
1771161	1771236	-	76	157959830	Spea_R0066	-	^{13 Val tRNA}
1771274	1771349	-	76	157959830	Spea_R0067	-	^{13 Val tRNA}
1771387	1771462	-	76	157959830	Spea_R0068	-	^{13 Val tRNA}
1771500	1771575	-	76	157959830	Spea_R0069	-	^{13 Val tRNA}
1771615	1771690	-	76	157959830	Spea_R0070	-	^{13 Val tRNA}
1773910	1773985	+	76	157959830	Spea_R0071	-	^{02 Ala tRNA}
1774066	1774141	+	76	157959830	Spea_R0072	-	^{04 Glu tRNA}
1774244	1774319	+	76	157959830	Spea_R0073	-	^{04 Glu tRNA}
1774422	1774497	+	76	157959830	Spea_R0074	-	^{04 Glu tRNA}
1774600	1774675	+	76	157959830	Spea_R0075	-	^{04 Glu tRNA}
1774778	1774853	+	76	157959830	Spea_R0076	-	^{04 Glu tRNA}
1774956	1775031	+	76	157959830	Spea_R0077	-	^{04 Glu tRNA}
1775134	1775209	+	76	157959830	Spea_R0078	-	^{04 Glu tRNA}
1775312	1775387	+	76	157959830	Spea_R0079	-	^{04 Glu tRNA}
1775641	1775716	+	76	157959830	Spea_R0080	-	^{04 Glu tRNA}
1775819	1775894	+	76	157959830	Spea_R0081	-	^{04 Glu tRNA}
1775997	1776072	+	76	157959830	Spea_R0082	-	^{04 Glu tRNA}
1776175	1776250	+	76	157959830	Spea_R0083	-	^{04 Glu tRNA}
1776353	1776428	+	76	157959830	Spea_R0084	-	^{04 Glu tRNA}
1776476	1776551	+	76	157959830	Spea_R0085	-	^{02 Ala tRNA}
2081308	2082842	+	1535	157959830	Spea_R0086	-	16S ribosomal RNA
2083192	2086086	+	2895	157959830	Spea_R0087	-	23S ribosomal RNA
2086219	2086334	+	116	157959830	Spea_R0088	-	5S ribosomal RNA
2143274	2143350	-	77	157959830	Spea_R0089	-	^{03 Pro tRNA}
2366164	2366240	-	77	157959830	Spea_R0090	-	^{16 Met tRNA}
2366281	2366357	-	77	157959830	Spea_R0091	-	^{16 Met tRNA}
2366398	2366474	-	77	157959830	Spea_R0092	-	^{16 Met tRNA}
2366515	2366591	-	77	157959830	Spea_R0093	-	^{16 Met tRNA}
2376218	2376308	+	91	157959830	Spea_R0094	-	^{08 Ser tRNA}
2379767	2379842	+	76	157959830	Spea_R0095	-	^{01 Gly tRNA}
2379856	2379929	+	74	157959830	Spea_R0096	-	^{19 Cys tRNA}
2380015	2380100	+	86	157959830	Spea_R0097	-	^{15 Leu tRNA}
2550857	2550932	+	76	157959830	Spea_R0098	-	^{01 Gly tRNA}
2550946	2551019	+	74	157959830	Spea_R0099	-	^{19 Cys tRNA}
2551115	2551200	+	86	157959830	Spea_R0100	-	^{15 Leu tRNA}
2551835	2551908	+	74	157959830	Spea_R0101	-	^{19 Cys tRNA}
2552004	2552089	+	86	157959830	Spea_R0102	-	^{15 Leu tRNA}
2552569	2552642	+	74	157959830	Spea_R0103	-	^{19 Cys tRNA}
2552775	2552860	+	86	157959830	Spea_R0104	-	^{15 Leu tRNA}
2558019	2558109	+	91	157959830	Spea_R0105	-	^{08 Ser tRNA}
2717566	2717655	-	90	157959830	Spea_R0106	-	^{08 Ser tRNA}
2759730	2759806	-	77	157959830	Spea_R0107	-	^{16 Met tRNA}
2759996	2760072	-	77	157959830	Spea_R0108	-	^{16 Met tRNA}
2760118	2760194	-	77	157959830	Spea_R0109	-	^{13 Val tRNA}
2760197	2760273	-	77	157959830	Spea_R0110	-	^{16 Met tRNA}
2760309	2760385	-	77	157959830	Spea_R0111	-	^{13 Val tRNA}
2760399	2760475	-	77	157959830	Spea_R0112	-	^{16 Met tRNA}
2858823	2858907	+	85	157959830	Spea_R0113	-	^{18 Tyr tRNA}
2858938	2859022	+	85	157959830	Spea_R0114	-	^{18 Tyr tRNA}
2859108	2859192	+	85	157959830	Spea_R0115	-	^{18 Tyr tRNA}
2859300	2859384	+	85	157959830	Spea_R0116	-	^{18 Tyr tRNA}
2859492	2859576	+	85	157959830	Spea_R0117	-	^{18 Tyr tRNA}
2866268	2866343	+	76	157959830	Spea_R0118	-	^{07 Asn tRNA}
2866389	2866464	+	76	157959830	Spea_R0119	-	^{07 Asn tRNA}
2866506	2866581	+	76	157959830	Spea_R0120	-	^{07 Asn tRNA}
2866608	2866683	+	76	157959830	Spea_R0121	-	^{07 Asn tRNA}
2866716	2866791	+	76	157959830	Spea_R0122	-	^{07 Asn tRNA}
2866825	2866900	+	76	157959830	Spea_R0123	-	^{07 Asn tRNA}
2866941	2867016	+	76	157959830	Spea_R0124	-	^{07 Asn tRNA}
2929429	2929505	-	77	157959830	Spea_R0125	-	^{06 Asp tRNA}
2929603	2929679	-	77	157959830	Spea_R0126	-	^{06 Asp tRNA}
2929777	2929853	-	77	157959830	Spea_R0127	-	^{06 Asp tRNA}
2929937	2930013	-	77	157959830	Spea_R0128	-	^{06 Asp tRNA}
3120289	3120364	-	76	157959830	Spea_R0129	-	^{10 Lys tRNA}
3120423	3120498	-	76	157959830	Spea_R0130	-	^{10 Lys tRNA}
3120557	3120632	-	76	157959830	Spea_R0131	-	^{10 Lys tRNA}
3120691	3120766	-	76	157959830	Spea_R0132	-	^{10 Lys tRNA}
3120826	3120901	-	76	157959830	Spea_R0133	-	^{10 Lys tRNA}
3120959	3121034	-	76	157959830	Spea_R0134	-	^{10 Lys tRNA}
3121093	3121168	-	76	157959830	Spea_R0135	-	^{10 Lys tRNA}
3121227	3121302	-	76	157959830	Spea_R0136	-	^{10 Lys tRNA}
3121362	3121437	-	76	157959830	Spea_R0137	-	^{10 Lys tRNA}
3121496	3121571	-	76	157959830	Spea_R0138	-	^{10 Lys tRNA}
3121631	3121706	-	76	157959830	Spea_R0139	-	^{10 Lys tRNA}
3121766	3121841	-	76	157959830	Spea_R0140	-	^{10 Lys tRNA}
3244371	3244485	-	115	157959830	Spea_R0141	-	misc_RNA
3269860	3269935	-	76	157959830	Spea_R0142	-	^{09 His tRNA}
3269944	3270020	-	77	157959830	Spea_R0143	-	^{11 Arg tRNA}
3270084	3270160	-	77	157959830	Spea_R0144	-	^{03 Pro tRNA}
3757983	3758059	-	77	157959830	Spea_R0145	-	^{16 Met tRNA}
3758163	3758249	-	87	157959830	Spea_R0146	-	^{15 Leu tRNA}
3835257	3835331	-	75	157959830	Spea_R0147	-	^{05 Gln tRNA}
3835383	3835467	-	85	157959830	Spea_R0148	-	^{15 Leu tRNA}
3835599	3835673	-	75	157959830	Spea_R0149	-	^{05 Gln tRNA}
3835694	3835778	-	85	157959830	Spea_R0150	-	^{15 Leu tRNA}
3835875	3835949	-	75	157959830	Spea_R0151	-	^{05 Gln tRNA}
3835999	3836083	-	85	157959830	Spea_R0152	-	^{15 Leu tRNA}
3836295	3836371	-	77	157959830	Spea_R0153	-	^{16 Met tRNA}
3836377	3836451	-	75	157959830	Spea_R0154	-	^{05 Gln tRNA}
3836499	3836583	-	85	157959830	Spea_R0155	-	^{15 Leu tRNA}
3836639	3836715	-	77	157959830	Spea_R0156	-	^{16 Met tRNA}
3836721	3836795	-	75	157959830	Spea_R0157	-	^{05 Gln tRNA}
3836843	3836927	-	85	157959830	Spea_R0158	-	^{15 Leu tRNA}
3836983	3837059	-	77	157959830	Spea_R0159	-	^{16 Met tRNA}
3862885	3862961	-	77	157959830	Spea_R0160	-	^{20 Trp tRNA}
3863129	3863205	-	77	157959830	Spea_R0161	-	^{20 Trp tRNA}
3867049	3867164	-	116	157959830	Spea_R0162	-	5S ribosomal RNA
3867297	3870191	-	2895	157959830	Spea_R0163	-	23S ribosomal RNA
3870541	3872075	-	1535	157959830	Spea_R0164	-	16S ribosomal RNA
3882154	3882229	+	76	157959830	Spea_R0165	-	^{17 Phe tRNA}
4331488	4331563	-	76	157959830	Spea_R0166	-	^{01 Gly tRNA}
4331694	4331769	-	76	157959830	Spea_R0167	-	^{01 Gly tRNA}
4331817	4331892	-	76	157959830	Spea_R0168	-	^{01 Gly tRNA}
4332055	4332130	-	76	157959830	Spea_R0169	-	^{01 Gly tRNA}
4332147	4332222	-	76	157959830	Spea_R0170	-	^{01 Gly tRNA}
4332271	4332346	-	76	157959830	Spea_R0171	-	^{01 Gly tRNA}
4616881	4616996	-	116	157959830	Spea_R0172	-	5S ribosomal RNA
4617129	4620023	-	2895	157959830	Spea_R0173	-	23S ribosomal RNA
4620395	4620470	-	76	157959830	Spea_R0174	-	^{02 Ala tRNA}
4620536	4620612	-	77	157959830	Spea_R0175	-	^{14 Ile tRNA}
4620688	4622222	-	1535	157959830	Spea_R0176	-	16S ribosomal RNA
5129770	5129846	-	77	157959830	Spea_R0177	-	^{06 Asp tRNA}
5129947	5130062	-	116	157959830	Spea_R0178	-	5S ribosomal RNA
5130196	5133090	-	2895	157959830	Spea_R0179	-	23S ribosomal RNA
5133441	5134975	-	1535	157959830	Spea_R0180	-	16S ribosomal RNA